fair_macs2_calling - 3.2.2

Features

• Snakemake wrappers up to 5.8.3
• fairgenomeindexer up to 3.9.7
• fairfastqcmultiqc up to 2.5.5
• fairbowtie2mapping up to 4.4.6

- Python
Published by tdayris over 1 year ago

fair_macs2_calling - 3.1.2

Features

• Snakemake wrappers up to 5.6.0
• fairgenomeindexer up to 3.9.5
• fairfastqcmultiqc up to 2.5.2
• fairbowtie2mapping up to 4.4.2

- Python
Published by tdayris over 1 year ago

fair_macs2_calling - 3.1.1

Fix

• Home summary when no TSS is found

- Python
Published by tdayris almost 2 years ago

fair_macs2_calling - 3.1.0

Features:

• fairbowtie2mapping up to 4.2.0
• testing alignment sieve

- Python
Published by tdayris almost 2 years ago

fair_macs2_calling - 3.0.1

Features

• fairbowtie2mapping up to 4.1.2

- Python
Published by tdayris almost 2 years ago

fair_macs2_calling - 3.0.0

Features

• Snakemake wrappers up to version 3.13.7
• fairgenomeindexer up to 3.8.1
• fairfastqcmultiqc up to 2.3.5
• fairbowtie2mapping up to 4.0.0

- Python
Published by tdayris almost 2 years ago

fair_macs2_calling - 2.0.5

Feature

• Raise plot-fingerprint time reservation
• Provide default value for coverage threshold in plotCoverage
• Raise number of threads in DeepTools

Fix

• Sort Macs2 BED before merging

- Python
Published by tdayris over 2 years ago

fair_macs2_calling - 2.0.4

Feature

• Sort Macs2 BED before annotation

- Python
Published by tdayris over 2 years ago

fair_macs2_calling - 2.0.3

Fix

• Type error on missing effective genome size

- Python
Published by tdayris over 2 years ago

fair_macs2_calling - 2.0.2

Features

• Prevent homer temp file collision
• Update github checkout images

Fix

• Missing read length in default genome size computation

- Python
Published by tdayris over 2 years ago

fair_macs2_calling - 2.0.1

Features

• Resources reservation

Fixes

• Samtools configuration

- Python
Published by tdayris over 2 years ago

fair_macs2_calling - 2.0.0

Breaking change: Non-canonical chromosomes removed by defaults

Features:

• fairgenomeindexer update to 3.0.0
• fairbowtie2mapping update to 3.0.0
• snakemake-wrappers updated to v3.3.3
• snakemake github action updated to 1.25.1

Fix:

• Wrong parameters passed to MultiQC when importing pipeline with no parameters
• Report testing deactivated as long as TBD issue is opened at snakeamke

Documentation:

• Pipeline description updated
• Usage generalized
• Gustave Roussy users have a dedicated usage section

- Python
Published by tdayris over 2 years ago

fair_macs2_calling - 1.0.2

Features

• Missing parameters added to documentation

Fixes

• Typo in usage
• Fix csv.Sniffer too large data content

- Python
Published by tdayris over 2 years ago

fair_macs2_calling - 1.0.1

Features

• Include FastQC in quality report
• Snakemake v8+ compatibility
• Snakemake-wrappers v3.3.3
• All MultiQC are in same tab in the report
• Snakemake environment always point to the latest version of Snakemake

Fixes

• Typo in multiqc tab of snakemake report
• Fix x/y axis visibility in catplot

- Python
Published by tdayris over 2 years ago