https://github.com/cbg-ethz/observationmhn
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (5.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: cbg-ethz
- License: mit
- Language: R
- Default Branch: main
- Size: 114 KB
Statistics
- Stars: 3
- Watchers: 4
- Forks: 5
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Observation Mutual Hazard Networks
This is the repository for the manuscript "Overcoming Observation Bias for Cancer Progression Modeling". It contains the data and resulting models.
The script ReproduceResults.py learns the models from the data. It requires the official MHN-package which can be installed with
bash
pip install mhn
The package is currently compatible with Python versions 3.8 to 3.11 but not yet with the most recent version 3.12.
Readers interested in implementation details can access the code at the package repository. The learning algorithm for the new observation MHN models exploits their likelihood-equivalence to certain classical MHNs (section 2.3 in the manuscript) and can thus reuse much of the existing numerical machinery.
Owner
- Name: Computational Biology Group (CBG)
- Login: cbg-ethz
- Kind: organization
- Location: Basel, Switzerland
- Website: https://www.bsse.ethz.ch/cbg
- Twitter: cbg_ethz
- Repositories: 91
- Profile: https://github.com/cbg-ethz
Beerenwinkel Lab at ETH Zurich
GitHub Events
Total
- Watch event: 1
- Push event: 1
- Fork event: 5
Last Year
- Watch event: 1
- Push event: 1
- Fork event: 5
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| RudiSchill | R****l@g****e | 14 |
| Stefan V | s****0@g****m | 1 |
| Andreas Lösch | a****h@s****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0