https://github.com/cbg-ethz/viloca_applications
This repo contains applications of the tool VILOCA.
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.2%) to scientific vocabulary
Last synced: 9 months ago
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JSON representation
Repository
This repo contains applications of the tool VILOCA.
Basic Info
- Host: GitHub
- Owner: cbg-ethz
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Size: 333 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 2
Created over 2 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
License
README.md
In this repository, we collect different workflows that use VILOCA for the analysis of heterogeneous viral NGS samples.
hiv_clincal and polio_sewage are the two applications that are presented in the manuscript:
"VILOCA: Sequencing quality aware haplotype reconstruction and mutation calling for short and long read data".
Find the instructions on how to reproduce the analysis in the respective directories.
Owner
- Name: Computational Biology Group (CBG)
- Login: cbg-ethz
- Kind: organization
- Location: Basel, Switzerland
- Website: https://www.bsse.ethz.ch/cbg
- Twitter: cbg_ethz
- Repositories: 91
- Profile: https://github.com/cbg-ethz
Beerenwinkel Lab at ETH Zurich
GitHub Events
Total
- Release event: 2
- Create event: 1
Last Year
- Release event: 2
- Create event: 1
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0