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microscopyforbeginnersreferenceguide

A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation

https://github.com/coba-nih/microscopyforbeginnersreferenceguide

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: plos.org, zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation

Basic Info
Statistics
  • Stars: 28
  • Watchers: 10
  • Forks: 10
  • Open Issues: 5
  • Releases: 2
Created over 3 years ago · Last pushed 11 months ago
Metadata Files
Readme License Citation

README.md

DOI

Microscopy For Beginners Reference Guide

Website :link: :arrow_right: CLICK HERE

A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation. See the paper here (original preprint here)

Owner

  • Name: Center for Open Bioimage Analysis
  • Login: COBA-NIH
  • Kind: organization
  • Email: COBA@broadinstitute.org

Citation (CITATION.cff) 

date-released: "2023-jun-01"
repository-code: "https://github.com/COBA-NIH/MicroscopyForBeginnersReferenceGuide"
message: "If you use this software, please cite it as below."
title: "A biologist's guide to planning and performing quantitative
               bioimaging experiments"
cff-version: "1.2.0"
authors:
  - family-names: "Senft"
    given-names: "Rebecca A"
    orcid: "https://orcid.org/0000-0003-0081-4170"
  - family-names: "Diaz-Rohrer"
    given-names: "Barbara"
    orcid: "https://orcid.org/0000-0002-4748-7077"
  - family-names: "Colarusso"
    given-names: "Pina"
    orcid: "https://orcid.org/0000-0002-2875-3579"
  - family-names: "Swift"
    given-names: "Lucy"
    orcid: "https://orcid.org/0000-0003-2447-1774"
  - family-names: "Jamali"
    given-names: "Nasim"
    orcid: "https://orcid.org/0000-0003-1851-6585"
  - family-names: "Jambor"
    given-names: "Helena"
    orcid: "https://orcid.org/0000-0003-3397-1842"
  - family-names: "Pengo"
    given-names: "Thomas"
    orcid: "https://orcid.org/0000-0002-9632-918X"
  - family-names: "Brideau"
    given-names: "Craig"
    orcid: "https://orcid.org/0000-0001-7992-0413"
  - family-names: "Llopis"
    given-names: "Paula Montero"
    orcid: "https://orcid.org/0000-0002-5983-2296"
  - family-names: "Uhlmann"
    given-names: "Virginie"
    orcid: "https://orcid.org/0000-0002-2859-9241"
  - family-names: "Kirk"
    given-names: "Jason"
  - family-names: "Gonzales"
    given-names: "Kevin Andrew"
    orcid: "https://orcid.org/0000-0001-7418-965X"
  - family-names: "Bankhead"
    given-names: "Peter"
    orcid: "https://orcid.org/0000-0003-4851-8813"
  - family-names: "Evans 3rd"
    given-names: "Edward L"
    orcid: "https://orcid.org/0000-0003-0278-4227"
  - family-names: "Giang"
    given-names: "William"
  - family-names: "Haase"
    given-names: "Robert"
    orcid: "https://orcid.org/0000-0001-5949-2327"
  - family-names: "Costa Cruz"
    given-names: "Mario"
    orcid: "https://orcid.org/0000-0003-0362-1323"
  - family-names: "Schätz"
    given-names: "Martin"
    orcid: "https://orcid.org/0000-0003-0931-4017"
  - family-names: "Eliceiri"
    given-names: "Kevin W"
    orcid: "https://orcid.org/0000-0001-8678-670X"
  - family-names: "Cimini"
    given-names: "Beth A"
    orcid: "https://orcid.org/0000-0001-9640-9318"
preferred-citation:
  type: "article"
  publisher:
    name: "Public Library of Science"
  date-released: "2023-jun-01"
  volume: "21"
  journal: "PLoS Biol."
  title: "A biologist's guide to planning and performing quantitative
               bioimaging experiments"
  publisher: "Public Library of Science"
  start: "e3002167"
  authors:
    - family-names: "Senft"
      given-names: "Rebecca A"
      orcid: "https://orcid.org/0000-0003-0081-4170"
    - family-names: "Diaz-Rohrer"
      given-names: "Barbara"
      orcid: "https://orcid.org/0000-0002-4748-7077"
    - family-names: "Colarusso"
      given-names: "Pina"
      orcid: "https://orcid.org/0000-0002-2875-3579"
    - family-names: "Swift"
      given-names: "Lucy"
      orcid: "https://orcid.org/0000-0003-2447-1774"
    - family-names: "Jamali"
      given-names: "Nasim"
      orcid: "https://orcid.org/0000-0003-1851-6585"
    - family-names: "Jambor"
      given-names: "Helena"
      orcid: "https://orcid.org/0000-0003-3397-1842"
    - family-names: "Pengo"
      given-names: "Thomas"
      orcid: "https://orcid.org/0000-0002-9632-918X"
    - family-names: "Brideau"
      given-names: "Craig"
      orcid: "https://orcid.org/0000-0001-7992-0413"
    - family-names: "Llopis"
      given-names: "Paula Montero"
      orcid: "https://orcid.org/0000-0002-5983-2296"
    - family-names: "Uhlmann"
      given-names: "Virginie"
      orcid: "https://orcid.org/0000-0002-2859-9241"
    - family-names: "Kirk"
      given-names: "Jason"
    - family-names: "Gonzales"
      given-names: "Kevin Andrew"
      orcid: "https://orcid.org/0000-0001-7418-965X"
    - family-names: "Bankhead"
      given-names: "Peter"
      orcid: "https://orcid.org/0000-0003-4851-8813"
    - family-names: "Evans 3rd"
      given-names: "Edward L"
      orcid: "https://orcid.org/0000-0003-0278-4227"
    - family-names: "Eliceiri"
      given-names: "Kevin W"
      orcid: "https://orcid.org/0000-0001-8678-670X"
    - family-names: "Cimini"
      given-names: "Beth A"
      orcid: "https://orcid.org/0000-0001-9640-9318"

GitHub Events

Total
  • Watch event: 16
  • Delete event: 25
  • Push event: 79
  • Pull request review event: 5
  • Pull request event: 45
  • Fork event: 1
  • Create event: 21
Last Year
  • Watch event: 16
  • Delete event: 25
  • Push event: 79
  • Pull request review event: 5
  • Pull request event: 45
  • Fork event: 1
  • Create event: 21

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 32
  • Average time to close issues: N/A
  • Average time to close pull requests: 4 months
  • Total issue authors: 0
  • Total pull request authors: 5
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 28
Past Year
  • Issues: 0
  • Pull requests: 26
  • Average time to close issues: N/A
  • Average time to close pull requests: 4 days
  • Issue authors: 0
  • Pull request authors: 5
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 22
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Top Authors
Issue Authors
  • mathomH (1)
Pull Request Authors
  • transifex-integration[bot] (40)
  • bethac07 (3)
  • github-actions[bot] (1)
  • martinschatz-cz (1)
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Dependencies

.github/workflows/deploy-book.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • peaceiris/actions-gh-pages v3.6.1 composite
requirements.txt pypi
  • jupyter-book *
  • jupytext *