https://github.com/cbg-ethz/demotape
Computational demultiplexing of targeted single-cell sequencing (tapestri) data
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (2.4%) to scientific vocabulary
Last synced: 10 months ago
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Repository
Computational demultiplexing of targeted single-cell sequencing (tapestri) data
Basic Info
- Host: GitHub
- Owner: cbg-ethz
- License: gpl-3.0
- Language: Python
- Default Branch: main
- Size: 160 KB
Statistics
- Stars: 2
- Watchers: 4
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 2 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
License
README.md
demoTape
Computational demultiplexing of targeted single-cell sequencing (tapestri) data
To submit the pipeline on an HPC via slurm executor:
sbatch
-n 1
--cpus-per-task=1
--time=48:00:00
--mem-per-cpu=1024
--output="logs/snakelog.$(date +%Y-%m-%d.%H-%M-%S).log"
--open-mode=truncate
--wrap="snakemake -s workflow/Snakefile_analysis -j 500 --configfile configs/multiplex_sims.yaml --executor slurm --rerun-incomplete --drop-metadata --use-conda -k"
Owner
- Name: Computational Biology Group (CBG)
- Login: cbg-ethz
- Kind: organization
- Location: Basel, Switzerland
- Website: https://www.bsse.ethz.ch/cbg
- Twitter: cbg_ethz
- Repositories: 91
- Profile: https://github.com/cbg-ethz
Beerenwinkel Lab at ETH Zurich
GitHub Events
Total
- Watch event: 1
- Push event: 2
Last Year
- Watch event: 1
- Push event: 2
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0