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https://github.com/cbica/mrisnapshot

A QC tool for verification of datasets with MRI images and derived masks

https://github.com/cbica/mrisnapshot

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 5 committers (40.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.7%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

A QC tool for verification of datasets with MRI images and derived masks

Basic Info
Statistics
  • Stars: 4
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created over 3 years ago · Last pushed about 1 year ago
Metadata Files
Readme License

README.rst 

MRISnapshot: Fast Visual QC of MRI Datasets
===========================================

Full documentation:  **https://cbica.github.io/MRISnapshot/**

About
-----
``MRISnapshot`` is a tool designed to facilitate the quality control (QC) process of raw and processed MRI datasets. 

``MRISnapshot`` is used to create a QC report in *.html* format with a few simple commands. The QC report displays snapshots of underlay and overlay images for multiple subjects, with easy navigation between scans, and with an editable QC form for annotations, which can be saved in a *.csv* report file. 

``MRISnapshot`` provides a set of configuration parameters to allow users to customize the contents of the report for different needs and use cases.

.. figure:: docs/resources/qcreport_example.png
   
   Example QC Report that shows ICV and Brainmask overlays on T1 scans in axial, sagittal and coronal views

Owner

  • Name: Center for Biomedical Image Computing & Analytics (CBICA)
  • Login: CBICA
  • Kind: organization
  • Email: software@cbica.upenn.edu
  • Location: Philadelphia, PA

CBICA focuses on the development and application of advanced computation techniques.

GitHub Events

Total
  • Push event: 1
Last Year
  • Push event: 1

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 85
  • Total Committers: 5
  • Avg Commits per committer: 17.0
  • Development Distribution Score (DDS): 0.576
Top Committers
Name Email Commits
erusg g****s@p****u 36
gurayerus g****s@g****m 22
Alexander Getka 5****a@u****m 13
gurayerus 5****s@u****m 7
alexandergetka G****A@p****u 7
Committer Domains (Top 20 + Academic)
pennmedicine.upenn.edu: 2

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 9
  • Average time to close issues: N/A
  • Average time to close pull requests: 6 minutes
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 17 minutes
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • gurayerus (9)
  • AlexanderGetka-cbica (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 30 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 2
pypi.org: mrisnapshot

QC tool for verification of datasets with MRI images and derived maps

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 30 Last month
Rankings
Dependent packages count: 6.6%
Downloads: 10.5%
Average: 19.8%
Forks count: 23.2%
Stargazers count: 28.2%
Dependent repos count: 30.6%
Maintainers (2)
AlexanderGetka gurayerus
Last synced: 11 months ago

Dependencies

.github/workflows/main.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
.github/workflows/pypi-publish.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
  • pypa/gh-action-pypi-publish 27b31702a0e7fc50959f5ad993c78deac1bdfc29 composite
.github/workflows/sphinx-docs.yml actions
  • actions/checkout v3 composite
  • actions/deploy-pages v1 composite
  • actions/setup-python v3 composite
  • actions/upload-pages-artifact v1 composite
requirements.txt pypi
  • Pillow >=9.0.0
  • nibabel ==3.2.1
  • numpy >=1.21
  • pandas >=1.3.4
setup.py pypi
  • matplotlib *
  • nibabel *
  • numpy *
  • pandas *
  • pillow *
  • scipy *
pyproject.toml pypi