https://github.com/cbica/uk_biobank_pipeline_v_1
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
○codemeta.json file
-
○.zenodo.json file
-
○DOI references
-
✓Academic publication links
Links to: biorxiv.org -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (5.1%) to scientific vocabulary
Last synced: 10 months ago
·
JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: CBICA
- License: other
- Language: Shell
- Default Branch: master
- Size: 2.12 MB
Statistics
- Stars: 11
- Watchers: 3
- Forks: 7
- Open Issues: 3
- Releases: 0
Created over 5 years ago
· Last pushed about 4 years ago
Metadata Files
Readme
License
README.md
UKbiobankpipeline
The UK_biobank_pipeline project is a processing pipeline written mainly in Python and bash. It uses FSL as the basic building blocks.
Dependencies
Most of the dependencies of UK_biobank_pipeline are listed in the requirements.txt file.
One additional dependency - gradunwarp - can be installed with a provided installation script
Documentation
UK_biobank_pipeline is explained in detail in the paper Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank.
Owner
- Name: Center for Biomedical Image Computing & Analytics (CBICA)
- Login: CBICA
- Kind: organization
- Email: software@cbica.upenn.edu
- Location: Philadelphia, PA
- Website: https://www.med.upenn.edu/cbica/
- Twitter: CBICAannounce
- Repositories: 21
- Profile: https://github.com/CBICA
CBICA focuses on the development and application of advanced computation techniques.
GitHub Events
Total
- Watch event: 3
Last Year
- Watch event: 3
Dependencies
requirements.txt
pypi
- ipython ==5.1.0
- matplotlib ==1.5.2
- nibabel ==2.1.0
- nose ==1.3.7
- numpy ==1.11.1
- pandas ==0.18.1
- pydicom ==0.9.9
- scikit-learn ==0.17.1
- scipy ==0.18.0
- sphinx ==1.4.6