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Recent Releases of https://github.com/cbica/nichart

https://github.com/cbica/nichart - 0.1

First release of [NiBAχ], the neuro-imaging brain aging chart.

What's Changed

  • Add basic setup by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/1
  • Add License by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/2
  • Adding GUI, data IO, Model & Plotting functionalities by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/7
  • Add visualization of normative ranges by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/9
  • Add Close and Quit menu and functionality by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/18
  • Display data statistics on UI by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/23
  • Adding save functionality and UI by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/26
  • Add process & view menu, plotting class by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/30
  • Add scatter plot of SPARE-AD and SPARE-BA by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/31
  • Remove population avg radio button & ok button by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/37
  • Auto data unloading by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/38
  • Translate MUSE ID into MUSE name and vice-versa by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/43
  • Add MUSE dictionary by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/46
  • Display loaded data, model names by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/47
  • Add ability to load SPARE-* model by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/24
  • Fix 50 by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/51
  • Select columns based on number of sites by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/53
  • Update documentation and PIP requirements by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/54
  • Change title of package and application by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/57
  • Add out-of-sample harmonization for new sites by @melhemr in https://github.com/CBICA/NiBAx/pull/56
  • Check existence of column by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/59
  • Plot SPARE_BA as brain age gap by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/60
  • Add plot of residual MUSE volumes by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/61
  • Automate installation of requirements by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/58
  • Make ROI combo box searchable by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/65
  • Add longitudinal trends for subset of subjects by @melhemr in https://github.com/CBICA/NiBAx/pull/64
  • Set ROI to DLICV if invalid entry is entered by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/67
  • Add all categorical variables as hue option by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/68
  • Add plugin toy example by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/70
  • Provide console script entry point by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/69
  • Add PyGUItemp by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/72
  • Add plugin arch based app by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/73
  • Define console script entrypoint for QtBrainChart by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/74
  • Add SPARE-* plugin by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/75
  • Prevent application from crashing because of missing column by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/76
  • Add harmonization residual overview fuction to gui by @melhemr in https://github.com/CBICA/NiBAx/pull/77
  • Add age trends plugin, move plotcanvas to core modules by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/79
  • Add model information to Harmonization tab in GUI by @melhemr in https://github.com/CBICA/NiBAx/pull/80
  • Show bounds of neuroHarmonize model by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/81
  • Update plot of harmonization by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/82
  • Update harmonization plot by @melhemr in https://github.com/CBICA/NiBAx/pull/84
  • Remove default tabs 1 and 2 from GUI main window by @melhemr in https://github.com/CBICA/NiBAx/pull/85
  • Remove customwidget from UI by @melhemr in https://github.com/CBICA/NiBAx/pull/87
  • Data window changes by @melhemr in https://github.com/CBICA/NiBAx/pull/88
  • Clean up SPARE-* tab aesthetics by @melhemr in https://github.com/CBICA/NiBAx/pull/91
  • Update harmonization tab and plot by @melhemr in https://github.com/CBICA/NiBAx/pull/90
  • Clean up Age Trends plot by @melhemr in https://github.com/CBICA/NiBAx/pull/89
  • Add searchable combo-boxes to age trends by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/92
  • Improve SPARE-* plot by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/86
  • Fix refresh of plot by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/95
  • Add combobox to select ROI in harmonization tab by @melhemr in https://github.com/CBICA/NiBAx/pull/97
  • Fixing minor issues with plots and design by @melhemr in https://github.com/CBICA/NiBAx/pull/98
  • Add save data functionality by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/99
  • About dialog & application icon by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/100
  • Remove Pyguitemp implementation by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/103
  • Correct variable assignment by @melhemr in https://github.com/CBICA/NiBAx/pull/101
  • Disable creation of table by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/104
  • Add data characteristics plugin by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/107
  • Show menu bar on Mac computers by @melhemr in https://github.com/CBICA/NiBAx/pull/108
  • Re-introduce table view by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/109
  • Prevent fragmentation of data frame by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/111
  • Fix crash due to missing model by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/113
  • Fix issue where NaNs appeared in data frame by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/114
  • Add data exploration tool by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/115
  • Add save, pan, zoom functionality as navigation toolbar to plotcanvas by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/116
  • Enable adding SPARE-* scores to data frame by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/119
  • Add tab order & fix tab names by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/120
  • Specify color palettes for plotting by @melhemr in https://github.com/CBICA/NiBAx/pull/123
  • Enable termination of SPARE-* computation by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/118
  • Add hue to SPARE-* plot by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/128
  • Add figure of harmonization parameters by @melhemr in https://github.com/CBICA/NiBAx/pull/125
  • Add logging capability by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/133
  • Declutter harmonization plot by @melhemr in https://github.com/CBICA/NiBAx/pull/136
  • Add searchable combobox to core.gui by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/137
  • Add gif to markdown to display usage by @melhemr in https://github.com/CBICA/NiBAx/pull/141
  • Remove old BrainChart and plugins folders by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/142
  • Rename QtBrainChartGUI to NiBAx by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/143
  • Add docs skeleton by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/144
  • Change permission of script by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/145
  • Update links by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/146
  • Add note of under development and update documentation by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/147
  • Add basic documentation by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/148
  • Deploy *.svg as binary not Git LFS by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/149
  • Treat folders as Python packages by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/150
  • Update pillow version by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/152
  • Add introduction to top level README by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/153
  • Update package versions by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/158
  • Add *.ui to package data by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/159
  • Add more detailed warning of incomplete docs by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/154
  • Update numpy version by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/163
  • Configure installation with pyproject.toml by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/164
  • Pyproject by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/165
  • Enable packaging with briefcase by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/166
  • Rename data plugin to loadsave by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/162
  • Derived Harmonized Volumes in Age Trends module by @melhemr in https://github.com/CBICA/NiBAx/pull/167
  • Set pandas==1.3.4 for compatibility by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/176
  • Remove dependence on index for harmonization by @melhemr in https://github.com/CBICA/NiBAx/pull/178
  • Adding Unit Tests by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/179
  • ROI supertitle for clarity when saving images by @melhemr in https://github.com/CBICA/NiBAx/pull/180
  • Ignore NaN in max and min functions to create plotting limits by @melhemr in https://github.com/CBICA/NiBAx/pull/186
  • Fix #185 by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/188
  • Dealing with derived volumes in harmonization by @melhemr in https://github.com/CBICA/NiBAx/pull/189
  • Synthetic datasets/model for testing purposes by @melhemr in https://github.com/CBICA/NiBAx/pull/193
  • Add ability to load *.csv files by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/187
  • Fix loading of data through CLI by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/195
  • Set specific version of reportlab package by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/196
  • Improve documentation of preprocessing by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/194
  • Add ability to load harmonization model with CLI by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/197
  • Instructions for creating a conda enviroment with python3.8.8 by @melhemr in https://github.com/CBICA/NiBAx/pull/181
  • Improve Sphinx build documentation by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/199
  • Add testing files to user guide for quickstart by @melhemr in https://github.com/CBICA/NiBAx/pull/202
  • Remove system-specific file ending by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/203
  • Fix buttons when using CLI by @melhemr in https://github.com/CBICA/NiBAx/pull/204
  • Add hard-coded model covariates to harmonization process if available by @melhemr in https://github.com/CBICA/NiBAx/pull/205
  • Add analytics site tag by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/207
  • Fix version number and github url in about dialog by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/209
  • Standardize names of synthetic testing files by @melhemr in https://github.com/CBICA/NiBAx/pull/208
  • Rename iStaging to NiBAx by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/211
  • Add documentation for harmonization plugin by @melhemr in https://github.com/CBICA/NiBAx/pull/212
  • Remove poetry references from setup for briefcase by @melhemr in https://github.com/CBICA/NiBAx/pull/213
  • Add short description of some plugins by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/200
  • Fix path to manifest file by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/215
  • Add license message to about section by @AbdulkadirA in https://github.com/CBICA/NiBAx/pull/210
  • Add disclaimer and Contact info to readme by @ashishsingh18 in https://github.com/CBICA/NiBAx/pull/216
  • Add placeholder documentation for one-click installation by @melhemr in https://github.com/CBICA/NiBAx/pull/214

New Contributors

  • @AbdulkadirA made their first contribution in https://github.com/CBICA/NiBAx/pull/1
  • @ashishsingh18 made their first contribution in https://github.com/CBICA/NiBAx/pull/2
  • @melhemr made their first contribution in https://github.com/CBICA/NiBAx/pull/56

Full Changelog: https://github.com/CBICA/NiBAx/commits/0.1

- Python
Published by ashishsingh18 almost 4 years ago