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molviewspec-search

Template application for using molviewspec with external search services

https://github.com/terkaslan/molviewspec-search

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.2%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Template application for using molviewspec with external search services

Basic Info
  • Host: GitHub
  • Owner: TerkaSlan
  • License: mit
  • Language: TypeScript
  • Default Branch: main
  • Size: 640 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Created 10 months ago · Last pushed 8 months ago
Metadata Files
Readme License Citation

README.md

Mol* MolViewSpec Search

DOI Node.js CI

This React application demonstrates programmatic creation of MolViewSpec (MVS) files for molecular visualization with Mol*.

image

Features

  • Search for molecular structures by PDB ID
  • Programmatically create MVS based on the search query
  • Pass the generated MVS to Mol* for advanced molecular visualization
  • Display MVS metadata and structure description in the description panel
  • Interactive 3D visualization with multiple representation styles

Getting Started

Prerequisites

  • Node.js (v14 or later recommended)
  • npm (usually comes with Node.js)

Installation

  1. Clone this repository
  2. Install dependencies:

bash npm install

  1. Start the development server:

bash npm start

The application will open in your browser at http://localhost:3000.

Technologies Used

  • React
  • TypeScript
  • Mol* molecular visualization library
  • MolViewSpec for structured visualization state management
  • ReactMarkdown for rendering descriptions

Learn More

Owner

  • Name: Terézia Slanináková
  • Login: TerkaSlan
  • Kind: user
  • Location: Brno, Czech Republic
  • Company: Faculty of Informatics, Masaryk University

Researching application of learned indexing to complex data. Ph.D. candidate at Faculty of Informatics, Masaryk University, Brno.

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "YOUR_NAME_HERE"
  given-names: "YOUR_NAME_HERE"
  orcid: "https://orcid.org/0000-0000-0000-0000"
- family-names: "Lisa"
  given-names: "Mona"
  orcid: "https://orcid.org/0000-0000-0000-0000"
title: "molviewspec-search"
version: 1.0.0
doi: 10.5281/zenodo.1234
date-released: 2025-05-22
url: "https://github.com/TerkaSlan/molviewspec-search"

GitHub Events

Total
  • Release event: 1
  • Push event: 41
  • Pull request event: 3
  • Create event: 5
Last Year
  • Release event: 1
  • Push event: 41
  • Pull request event: 3
  • Create event: 5

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 53
  • Total Committers: 1
  • Avg Commits per committer: 53.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 53
  • Committers: 1
  • Avg Commits per committer: 53.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Terézia Slanináková 4****6@m****z 53
Committer Domains (Top 20 + Academic)
muni.cz: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 18 minutes
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 18 minutes
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • TerkaSlan (4)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

package-lock.json npm
  • 1400 dependencies
package.json npm
  • sass ^1.88.0 development
  • @testing-library/dom ^10.4.0
  • @testing-library/jest-dom ^6.6.3
  • @testing-library/react ^16.3.0
  • @testing-library/user-event ^13.5.0
  • @types/jest ^27.5.2
  • @types/node ^16.18.126
  • @types/react ^19.1.4
  • @types/react-dom ^19.1.5
  • molstar ^4.14.1
  • react ^19.1.0
  • react-dom ^19.1.0
  • react-scripts 5.0.1
  • typescript ^4.9.5
  • web-vitals ^2.1.4
.github/workflows/test.yaml actions
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
Dockerfile docker
  • nginxinc/nginx-unprivileged alpine build
  • node 18-alpine build
docker-compose.yml docker