https://github.com/cbrnr/scot
EEG/MEG Source Connectivity Toolbox in Python
Science Score: 13.0%
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Low similarity (13.2%) to scientific vocabulary
Last synced: 10 months ago
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Repository
EEG/MEG Source Connectivity Toolbox in Python
Basic Info
- Host: GitHub
- Owner: cbrnr
- License: mit
- Language: Python
- Default Branch: main
- Homepage: http://scot-dev.github.io/scot-doc/index.html
- Size: 1.71 MB
Statistics
- Stars: 3
- Watchers: 3
- Forks: 0
- Open Issues: 0
- Releases: 0
Fork of scot-dev/scot
Created over 10 years ago
· Last pushed over 2 years ago
https://github.com/cbrnr/scot/blob/main/
[](https://pypi.org/project/scot/)
[](https://scot-dev.github.io/scot-doc/index.html)
[](https://doi.org/10.3389/fninf.2014.00022)
[](LICENSE)
## SCoT
SCoT is a Python package for EEG/MEG source connectivity estimation. In particular, it includes measures of directed connectivity based on vector autoregressive modeling.
### Obtaining SCoT
Use the following command to install the latest release:
pip install scot
### Documentation
Documentation is available at http://scot-dev.github.io/scot-doc/index.html.
### Dependencies
SCoT requires [numpy](http://www.numpy.org/) 1.8.2 and [scipy](https://scipy.org/) 0.13.3. Optionally, [matplotlib](https://matplotlib.org/) 1.4.0, [scikit-learn](https://scikit-learn.org/stable/) 0.15.0, and [mne](https://mne.tools/) 0.11.0 can be installed for additional functionality.
### Examples
To run the examples on Linux, invoke the following commands inside the SCoT directory:
PYTHONPATH=. python examples/misc/connectivity.py
PYTHONPATH=. python examples/misc/timefrequency.py
etc.
Note that the example data from https://github.com/SCoT-dev/scot-data needs to be available. The `scot-data` package must be on Python's search path.
### Building the docs
In February 2024 we managed to build the docs with the following package versions:
```
[tool.poetry.dependencies]
python = "^3.11"
sphinx = "^7.2.6"
matplotlib = "^3.8.3"
scipy = "^1.12.0"
scikit-learn = "^1.4.1.post1"
```
Note that these are the most recent versions at the moment, so it is likely that future versions will just work.
When using a newer version of sphinx, it may be necessary to update the subrepository in doc/sphinxext/numpydoc.
Owner
- Name: Clemens Brunner
- Login: cbrnr
- Kind: user
- Location: Graz, Austria
- Company: University of Graz
- Website: https://cbrnr.github.io/
- Repositories: 52
- Profile: https://github.com/cbrnr