spant - spant 3.5.0

• Added a function to help bids sorting of MRS and MRI data : mr_data2bids.
• Extra options to fitsvs : dfpcorrrefsubset and wrefsubset.
• fitsvs default now uses the mean of all available water reference scans, rather than just the first dynamic. Set wref_subset = 1 to reproduce previous results.

Scientific Software - Peer-reviewed - R
Published by martin3141 10 months ago

spant - spant 3.4.0

• Added a function to read DKD's sLASER MoCo log file.
• Bug fix for TE parameter determination from Siemens IMA files.

Scientific Software - Peer-reviewed - R
Published by martin3141 12 months ago

spant - spant 3.3.0

• Added voxel render on MRI images to fit_svs.
• Added voxel segmentation render and support to fit_svs.
• Bug fix for TE parameter determination from Siemens TWIX files.
• Added extra output data from fit_svs to aid group analyses.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 1 year ago

spant - spant 3.2.0

• Individual metabolite plots in the html report are now labelled to workaround an R Markdown bug where identical plots (eg when signal is zero) are sometimes not shown.
• Added get_hrf function to spant namespace.
• Tentative support for a command line interface : spantfitsvs.
• Tentative support for LCModel analysis in the fit_svs function and cli.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 1 year ago

spant - spant 3.1.0

• Tentative implementation of a standard single voxel MRS processing pipeline function: fit_svs.
• spant user guide has been added to the project: https://spantdoc.wilsonlab.co.uk/
• Implemented basis caching for sim_basis.
• scaleampmolar function has been depreciated. Please use scaleamplegacy for LCModel style concentration scaling instead.
• Assumed T1 and T2 relaxation values for molal concentration scaling have been updated. See the user guide for details.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 1 year ago

spant - spant 2.24.0

• Added argument to adjust the legend font size in ortho3 function.
• Improved metabolite simulation performance thanks to the expm package recently adding support for complex matrices.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 1 year ago

spant - spant 2.23.0

• abfit options for lipid and MM maximum broadening and maximum frequency shift now default to be the same as the metabolite values unless explicitly changed.
• Added function to calculate the correlation matrix from a basis_set.
• Fix for RDA files where a comma is sometimes used as a decimal point.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 2 years ago

spant - spant 2.22.0

• Added findbidsmrs and mrs_data2bids helper functions.
• Improved handling of CMRR semi-LASER SVS water reference scans.
• Added functions for GLS coil combination.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 2 years ago

spant - spant 2.21.0

• Fixed compiler warnings for Fortran code.
• Added glm_spec function.
• Added addnoisespec_snr function.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 2 years ago

spant - spant 2.20.0

• Added vertical line colour and linetype options for stackplots.
• Added option to give Y axis labels in units of seconds for spectrograms.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 2 years ago

spant - spant 2.19.0

• Removed dependency on smoother package.
• Added functions for generating BOLD and trapezoidal response shapes.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 2 years ago

spant - spant 2.18.0

• Improved automated file type detection.
• Bug fixes for DICOM MRS reader.
• scale_spec function now works with basis set objects.
• Added invert_fit option to plotting methods.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 2 years ago

spant - spant 2.17.0

• Simulation duration output is now rounded to 2dp.
• sim_basis now accepts a character vector of molecular names.
• Added get1hbrainbasisnames function.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 2 years ago

spant - spant 2.16.0

• Added subset option to mean_dyns function.
• Added vline option to plot.
• Added common 31P brain metabolites.
• Added verbose option to sim_basis.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 2 years ago

spant - spant 2.15.0

• An SNR estimate of zero in comb_coils is now a failure case.
• Bug fix for GE pfile reader header revision 20.
• Added a function for finding valid MRS files : findmrsfiles.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 2 years ago

spant - spant 2.14.0

• Added vline argument to stackplot function.
• Added functions to set MRS data TR and number of transients.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 3 years ago

spant - spant 2.13.0

• Improved defaults for simbrain1h function.
• Added scalebasisamp function.
• Added crop_basis function.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 3 years ago

spant - spant 2.12.0

• Amplitude scaling functions duplicate water reference amplitudes when sensible.
• Added hline option to the mrs_data plot function.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 3 years ago

spant - spant 2.11.0

• Bug fix for Siemens RDA slice thickness detection.
• ProtocolName is now read from GE p-files.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 3 years ago

spant - spant 2.10.0

• Tentative support for UIH DICOM MRS format.
• Improved support for reading GE p-files.
• Added a WIP function to export a one-page summary pdf of the fit result "onepagepdf".

Scientific Software - Peer-reviewed - R
Published by martin3141 about 3 years ago

spant - spant 2.9.0

• Bug fix when using align function with masked data.
• meandynblocks returns the input data when block_size is set to 1.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 3 years ago

spant - spant 2.7.0

• Added Manufacturer tag to metadata.
• Added maskxycorners and maskxyellipse functions.
• Added functions to fit T1 and T2 relaxation curves.
• Updated CI checks.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 3 years ago

spant - spant 2.6.0

• Masked spectra plotted with image are now shown with a value of zero.
• Added function to read .pta files - readpulsepta.
• Added a function to make basis set objects from a directory of LCModel formatted RAW files - makebasisfrom_raw.
• Added horizontal line to fit result plots.
• Improvements to reading LCM .raw files with variable numerical columns.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 3 years ago

spant - spant 2.5.0

• Improved function documentation for water concentration scaling.
• Added water and tCr scaling examples to the introduction vignette.
• Better error checking for reading ima files.
• read_basis function improved to work with variable formatting.
• Improved default method of time-domain signal amplitude estimation.
• Added helper functions for working with basis set objects: scalebasisfromsinglet, resamplebasis and getbasissubset.
• Bug fix for STEAM basis simulation being incorrectly scaled for internal water scaling methods.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 3 years ago

spant - spant 2.4.0

• Performance improvement for reading VD format TWIX files.
• Function added to scale all metabolite levels by a set value (scaleampratio_value).

Scientific Software - Peer-reviewed - R
Published by martin3141 over 3 years ago

spant - spant 2.3.0

• Verbose option added to readimacoildir and readimadyndir functions.
• Support added for reading jMRUI txt formatted MRS data.
• simbrain1h default sequence changed to semi-LASER and line-broadening option added.
• Bug fix for reading LCModel RAW files.
• Bug fix for HSVD filter when only 0 or 1 components are found in the filter region.
• Improved removal of unwanted data points for reading TWIX formatted data.
• A json sidecar is automatically written when exporting NIfTI MRS formatted data.
• TWIX reader improved to only read data points from the last scan in the file. This also fixes a rare bug.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 3 years ago

spant - spant 2.2.0

• peak_info function now works with masked datasets.
• Bug fix for HSVD function not working with frequency domain data.
• Bug fix for TWIX affine calculation when not using power of two matrix dimensions.
• New function (croptdpts_pot) to round a dataset length down to the nearest power of 2.
• Added retmetabonly option to comb_coils.
• rats now only returns the corrected data by default, note this could break old code.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 3 years ago

spant - spant 2.1.0

• y-axis label can now be changed with a new argument (yaxislab) to plot.mrsdata.
• Segmentation files are now checked for non-integer values.
• gridplot has better row and col number defaults for MRSI, and has a bug fix for plotting masked spectra.
• Updated functions for dealing with lists of MRSI datasets.
• Bug fix for crop_xy function when working with odd matrix sizes.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 4 years ago

spant - spant 1.21.0

• Added MSM and acetone to the set of internally defined molecules.
• writemrsnifti function removed from userspace. write_mrs should be used instead.
• settdpts and croptdpts now work with lists of spectra.
• Multiple files can now be written by passing a list of spectra to write_mrs.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 4 years ago

spant - spant 1.20.0

• Options added to ft_dyns to return the modulus of the 2D spectra and to pre-transform the chemical shift axis if needed.
• Bug fix for printing lists of mrs_data objects.
• combcoils function now supports lists of mrsdata objects.
• IMA reader now respects the verbose option in read_mrs.
• Bug fix for getmrsivoi ignoring the ker argument.
• Bug fix for reading Siemens TWIX files.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 4 years ago

spant - spant 1.19.0

• Added summrslist function.
• Bug fix for operating on mrsdata with single values that aren't numeric types. For example, multiplying mrsdata by a single complex number now works.
• A number of common preprocessing functions now operate on lists of mrs_data objects.
• Change to NIfTI MRS reader to fix a failing test when using the development version of RNifti.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 4 years ago

spant - spant 1.18.0

• Better behaviour when using stackplot with single spectra datasets.
• Better behaviour when using image with single spectra datasets.
• Bug fix for reading MEGA-PRESS data in TWIX format.
• Better error checking for lists of spectra.
• Bug fix for calculating NAA linewidth from MEGA-PRESS data.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 4 years ago

spant - spant 1.17.0

• New function added (recontwix2d) for reconstructing basic phase encoded twix 2D MRSI data.
• File name argument for readmrs now permits globbing, eg readmrs("*.dcm").
• Improved plotting of metabolite maps containing infinite values.
• Improvements to GE p-file reader.
• Bug fix for TWIX MRSI voxel dimensions.
• getmrsi2dseg now returns partial volume maps as well as a data frame.
• Improved error handling for spec_op function.
• apodise_xy can now be applied to multi-coil and dynamic datasets.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 4 years ago

spant - spant 1.16.0

• The package has been published in the Journal for Open Source Software : "spant: An R package for magnetic resonance spectroscopy analysis. JOSS 2021, 6(67), 3646".
• The basis result of the HSVD function is now an mrs_data object.
• The complete model signal is now output by the HSVD function.
• image function x-axis updated to be consistent with other plotting methods.
• Minor refactor of the simulation code and a dependency swap from complexplus to exmp packages.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 4 years ago

spant - spant 1.15.0

• Added a unit test for reading and writing LCM .basis formatted files.
• Added FWHM estimates for tCr and tCho in ABfit.
• Added water suppression efficiency and water FWHM measures to the diagnostic output of svs1hbrain_analysis.
• Added getheaddyns and gettaildyns to return the first and last dynamic scans within a dataset.
• Fixed CI errors.
• Improved installation instructions.
• Removed combcsvresults function and reduced the number of required packages.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 4 years ago

spant - spant 1.14.0

• Added glycerol simulation parameters, e.g. getmolparas("glyc").
• Bug fix for readima* functions.
• Improved y = 0 baseline for stackplot when setting bl_lty parameter.
• Removed normmrs function and replaced with scalespec for simple data scaling tasks, eg scaling based on the integration of a spectral region.
• Added spec_op function for performing simple summary operations on spectral segments.
• Changed the name of scalemrs function to scalemrs_amp.
• Added meanmrslist function.
• Improved LCM RAW and BASIS readers (contribution from Alex Craven).

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 5 years ago

spant - spant 1.13.0

spant 1.13.0

• ABfit frequency shifts limits are now specified in ppm rather than Hz to improve consistency between field strengths.
• NAA linewidth is now estimated and output by ABfit when NAAG is absent - useful for BRAINO phantom scans.
• Warning now given when spectra are mathematically combined and are not both in the same time/frequency domain.
• sum_mrs function added to simplify combining spectra within a pipe.
• scale_mrs function added to simplify scaling a spectrum within a pipe.
• add_noise function added to simplify generating simulated data with a pipe.
• hsvd_filt function now accepts a frequency range in ppm units and gives the option to return the model rather than the filtered data.
• Bug fix for hsvdfilt function where the maxdamp argument was ignored.
• SVS reference scans, found in some TWIX files, are now removed by default.
• Bug fix for reading list/data when only one coil element is used.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 5 years ago

spant - spant 1.12.0

• Added 2HG and citrate simulation parameters. e.g. getmolparas("2hg").
• Better print output for molecular definitions.
• Added metabolite and basis simulation vignettes.
• Bug fix for setting the ppm reference when reading LCModel RAW files.
• Bug fix for ABfit CRLB calculation of combined signals, eg tNAA, tCr.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 5 years ago

spant - spant 1.11.0

• Options added to allow extra information to attached to mrsdata and fitresult objects as a data frame.
• New functions (combinefitXXX) for working with multiple fit results contained within a list structure.
• Basis set and noise region are now checked for validity in ABfit.
• Added spantabfitbenchmark function.
• Tentative functions for performing "standard" 1H brain analyses: svs1hbrainanalysis and svs1hbrainbatch_analysis.
• Improved support for LCModel analyses.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 5 years ago

spant - spant 1.10.0

• Fix for NIfTI MRS reader/writer.
• ortho3 now shows correct labels for orientations other than RAS.
• ortho3int function renamed to ortho3inter.
• Argument order change to plotvoioverlay and plotvoioverlay_seg to be more consistent with ortho3.
• Regression fix for partial volume segmentation plotting.
• Echo time parameter is now stored in the meta structure.
• ABfit now performs a 1D phase parameter search before the prefit stage to improve reliability. May be disabled with the prefitphasesearch fit option.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 5 years ago

spant - spant 1.9.0

• NIfTI MRS reader and writer now uses the header extension for metadata. Thanks to Jon Clayden for adding extension read/write support to the RNifti package.
• Default plots now have gridlines in the y-direction and the plot line is now thicker and coloured blue.
• Opacity option added to the plotting functions (alpha).
• Bug fix for comb_coils with SVS data.
• Bug fixes for Siemens geometry information.
• Changed the ordering of arguments to writemrs and writemrs_nifti to improve consistency with other functions.
• Internal function (ortho3) now used to plot voxel locations on MRI.
• Internal dicom reader function added.
• Tentative support for Siemens and Philips DICOM MRS format added.
• Internal changes to the way orientation information is handled.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 5 years ago

spant - spant 1.8.0

• Added gridplot function.
• New functions added for down sampling.
• Added signal space projection method for MRSI.
• Geometry information is now read from Siemens twix files.
• GitHub actions are now used for continuous integration instead of Travis and AppVeyor.
• Added precomp function to avoid repeated computation.
• mrs_data2mat function now collapses all dimensions to dynamics by default.
• mrs_data objects now store the nucleus.
• Added a reader for old Varian format (fid/procpar) data.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 5 years ago

spant - spant 1.7.0

• Added writemrs function which guesses the output format from the file extension or can be specified as an argument. writemrs_XXX functions have been depreciated.
• read_mrs function now tries to guess the format from the file extension.
• Added json sidecar to NIFTI MRS export function.
• Added the option to read MRS data from a NIFTI file and json sidecar using the read_mrs function.
• Changed default crop_spec region to between 4.0 and 0.2 ppm.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 6 years ago

spant - spant 1.6.0

• Bug fix for GE P file reader.
• Added downsample_mrs function.
• Tentative function (writemrsnifti) to write MRS data as a NIFTI format file - for evaluation purposes only.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 6 years ago

spant - spant 1.5.0

• Added an option to ABfit to allow the metabolite amplitudes to be negative (ahatcalcmethod).
• Removed lsei package dependency.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 6 years ago

spant - spant 1.4.0

• Added the option to plot a y = 0 baseline trace for stackplot.mrs_data.
• Added convenience functions to read and write mrs_data to rds format.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 6 years ago

spant - spant 1.2.1

• Added the option to display a progress bar in fit_mrs function for better conformance to "Writing R Extensions" in non-interactive use.
• Changed test tolerance to accommodate differences with OSX.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 6 years ago

spant - spant 1.2.0

• Performance improvement for HSVD water filter.
• ABfit unit tests are now run on simulated data to improve consistency between different platforms.
• Improvements to fit amplitude scaling code.
• Improved checking for mrs_data processing functions.
• Added preprocessing steps vignette.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 6 years ago

spant - spant 1.1.0

• Improved ppm labels for ABfit plot results.
• Bug fix for plotslicefit when using fits from masked data.
• Updated unit tests.
• Added vignette on manually adjusting ABfit baseline smoothness.
• Updated the introduction vignette.
• Bug fixes for image and stackplot functions for masked MRS data.
• Bug fix for using RATS with masked MRS data.
• Changes to prepare for for R 4.0.0.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 6 years ago

spant - spant 1.0.0

• ABfit analysis method has been added, and is now default for the mrs_fit function.
• Added reader for LCModel RAW format data.
• Added readmridyn_dir function for reading dynamic MRS exported from Siemens scanners.
• Bug fixes for 2D MRSI voxel segmentation calculation.
• Bug fixes for Siemens IMA format reader for SVS data.
• Optional colourbar added to ortho3 function.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 6 years ago

spant - spant 0.19.0

• Added Asc, BHB, Cho, PEth and Ser simulation parameters.
• Added ker option to getmrsivoi function.
• Added append_basis function to combine two basis sets objects.
• The align function now accepts more than one reference frequency.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 6 years ago

spant - spant 0.17.0

• Added a function to grid shift 2D MRSI data in the x/y direction.
• Better plotting/fitting support for masking data by setting data points to NA.
• Bug fix for interactive voxel selection position indicator.
• Added mask_xy to mask voxels in a centered rectangular region.
• Minor changes to improve parallel processing support.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 6 years ago

spant - spant 0.16.0

• SNR is now defined as the max data point divided by the standard deviation of the noise (n.b. factor of two has been removed in-line with upcoming terminology paper).
• Default rats method improved to work with multidimensional datasets.
• Added norm_mrs function to normalise the intensity of spectral data.
• Added bc_constant function to correct spectral baselines by a constant offset.
• Added re_weighting function to apply a resolution enhancement weighting to the FID.
• Performance improvement for apodise_xy function.
• sd function now works for mrs_data.
• Added 2D MRSI support for Siemens IMA format.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 6 years ago

spant - spant 0.15.0

• Bug fix for using auto_phase function with a single spectrum.
• Bug fix for comb_coils not returning unaveraged data when requested.
• Added options to combine metabolite signals from the stackplot of a fit object and adjust the plot margins.
• Added comb_fits function.
• Added collapsetodyns function for mrs_fit objects.
• RDA reader now extracts geometry information.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 6 years ago

spant - spant 0.14.0

• Added options to omit basis signals, change label names and combine lipid and MM signals from the stackplot of a fit object.
• Added auto_phase function for zeroth order phase-correction of simple spectra.
• Added get_subset function to aid MRSI slicing.
• Added decimate_mrs function.
• Added fit_amps function to quickly extract amplitude estimates from a fit object.
• Bug fix for int_spec function.
• simbasis function arguments updated to accept acqpar objects.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 7 years ago

spant - spant 0.13.0

• Various bug fixes for Siemens TWIX reader.
• rats and tdsr functions now use the mean spectrum as the default reference.
• Added the option to remove the x axis in an mrs_data plot.
• Added ylim and y_scale options to fit plotting.
• Added %$% operator from magrittr package.
• Added an interpolation option to calcspecsnr.
• Added hline and vline options to image.mrs_data.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 7 years ago

spant - spant 0.12.0

• Fit results stackplot now has the option to display labels.
• Added the option to reverse eddy current correction.
• Improved GE p-file reader.
• diff function can now be applied to mrs_data objects.
• Complex functions: Re, Im, Mod, Arg and Conj can now be applied to mrs_data objects.
• Default simulations for Glc and NAAG have been improved.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 7 years ago

spant - spant 0.11.0

• Added mar argument to plot command.
• td2fd and fd2td now give warnings when used with data already in the target domain.
• Improved documentation formatting consistency and fixed some spelling errors.
• Added rats method.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 8 years ago

spant - spant 0.10.0

• The names of in-built pulse sequence functions now all start with seq_* to make them easier to find.
• Added new functions to simulate the following MRS sequences: CPMG, MEGA-PRESS, STEAM, sLASER. sLASER sequence kindly contributed by Pierre-Gilles Henry.
• Bug fix for getmolnames function.
• stackplot function now accepts labels argument and time-domain plotting.
• defacqparas function now accepts arguments to override the defaults.
• Added a source field to mol.paras object to cite the origin of the values.
• Option to restore plotting par defaults.
• The magrittr pipe operator is now exported.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 8 years ago

spant - spant 0.9.0

• Updated plotting modes to be one of : "re", "im", "mod" or "arg".
• Updated int_spec function to use "re", "im", or "mod".
• Added a function to replicate data across a particular dimension.
• Added a convenience function to simulate normal looking 1H brain MRS data.
• phase and shift functions now accept vector inputs.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 8 years ago

spant - spant 0.7.0

• Added new function for frequency drift correction.
• Added support for Siemens ima and TWIX SVS data.
• Added support for GE p-file SVS data.
• Added apply_axes fn.
• Support for reading SPM style segmentation results (spm_pve2categorical).

Scientific Software - Peer-reviewed - R
Published by martin3141 over 8 years ago

spant - spant 0.6.0

• Interactive plotting function added for fit results - plotfitslice_inter.
• Bug fix for appending dynamic results.
• Bug fix for reading list data files without reference data.
• Bug fix for append_dyns function.
• basis2mrs_data function has been extended to allow the summation of basis elements and setting of individual amplitudes.
• Added a shift function for manual frequency shift adjustment.
• Added initial unit tests and automated coveralls checking.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 8 years ago

spant - spant 0.5.0

• A default brain PRESS basis is now simulated by the fit_mrs function when the basis argument isn't specified.
• Added calcpeakinfo function for simple singlet analyses.
• crop_spec function now maintains the original frequency scale.
• The basis set used for analyses has now been added to the fit result object.
• Bug fix for simulating basis sets with one element.
• lb function can now be used with basis-set objects.
• Bug fix for spar_sdat reader for non-localised MRS.
• AppVeyor now being used to test Windows compatibility - John Muschelli.

Scientific Software - Peer-reviewed - R
Published by martin3141 over 8 years ago

spant - spant 0.4.0

• Bug fix for SPAR/SDAT SVS voxel dimensions.
• MRSI support added for Philips SPAR/SDAT data.
• Fit plots now default to the full spectral range unless xlim is specified.
• Fit plots allow the x, y, z, coil, dynamic indices to be specified.
• Added the option to subtract the baseline from fit plots.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 9 years ago

spant - spant 0.3.0

• Added stackplot method for fit objects.
• Added functions for registering and visualising SVS volumes on images and performing partial volume correction.
• Philips "list data" also now reads noise scans.
• calccoilnoisecor, calccoilnoisesd functions added to aid coil combination.
• Documentation updates for plotting methods.
• Added some simulation methods to userland.

Scientific Software - Peer-reviewed - R
Published by martin3141 almost 9 years ago

spant - spant 0.2.0

• Added Siemens RDA format reader.
• Added Philips "list data" format reader.
• Added Bruker paravision format reader.
• Added PROPACK option for HSVD based filtering.
• Added a coil combination function.
• Bug fix for incorrect ppm scale on fit plots when fs != 2000Hz.
• Bug fix for VARPRO analytical jacobian calculation.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 9 years ago

spant - spant 0.1.0

• First public release.

Scientific Software - Peer-reviewed - R
Published by martin3141 about 9 years ago