https://github.com/cckeneally/ch4_microbiome_analyses
Code for analysis of microbiome for methane PhD chapter:
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.4%) to scientific vocabulary
Last synced: 6 months ago
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Repository
Code for analysis of microbiome for methane PhD chapter:
Basic Info
- Host: GitHub
- Owner: cckeneally
- License: gpl-3.0
- Language: R
- Default Branch: main
- Size: 5.78 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 3 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
License
README.md
CH4microbiomeanalyses
Code for analysis of microbiome for methane PhD chapter
Please cite the below when using any data or code here:
Keneally, C., Southgate, M., Chilton, D., Gaget, V., Welsh, D.T., Mosley, L., Erler, D.V., Kidd, S.P. and Brookes, J. (2024), Organic matter accumulation drives methylotrophic methanogenesis and microbial ecology in a hypersaline coastal lagoon. Limnol Oceanogr.
DOI: https://doi.org/10.1002/lno.12637
Contents:
- Qiime processing of raw paired-end reads with DADA2
- Main Analyses
- PICRUSt Analyses
- File of PICRUSt predicted KEGG orthologs (predmetagenomeunstrat.tsv)
Raw reads are available at x
Owner
- Name: Chris Keneally
- Login: cckeneally
- Kind: user
- Location: Adelaide
- Company: The University of Adelaide
- Website: linktr.ee/cckeneally
- Twitter: cckeneally
- Repositories: 2
- Profile: https://github.com/cckeneally
PhD Candidate studying microbial communities and nutrient cycling in hypersaline coastal systems