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scitree

Scitree is a recursive directory listing tool optimized for science

https://github.com/j535d165/scitree

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.7%) to scientific vocabulary

Keywords

cli directory-lister directory-listing file-sorting python research research-data-management science sorting tree utrecht-university
Last synced: 4 months ago · JSON representation ·

Repository

Scitree is a recursive directory listing tool optimized for science

Basic Info
  • Host: GitHub
  • Owner: J535D165
  • License: mit
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 51.8 KB
Statistics
  • Stars: 8
  • Watchers: 2
  • Forks: 2
  • Open Issues: 3
  • Releases: 3
Topics
cli directory-lister directory-listing file-sorting python research research-data-management science sorting tree utrecht-university
Created about 3 years ago · Last pushed over 2 years ago
Metadata Files
Readme License Citation

README.md

Scitree - Like tree, but optimized for science

Scitree - Like tree, but optimized for science

PyPI DOI

In computing, tree is a recursive directory listing command or program that produces a depth-indented listing of files. Wikipedia, 2022.

Scitree is like tree, but different. Instead of sorting content on its name, scitree sorts and highlights given opiniated scientific principles. In this way, you can inspect directory listings more easily.

Scitree is based on scisort, a Python package to sort file paths based on scientific principles.

Philosophy

Philosophy of scisort and scitree:

* Only for scitree.

For more information about the structure, see scisort/scisort/keygen.py.

Installation

Scitree requires Python 3.6 or later.

sh pip install scitree

Getting started

scitree command

Scittree command on the command line outputs a tree. sh scitree

```sh ./ ├── README.md ├── LICENSE.txt ├── jobs.sh ├── data/ │ └── Bos2018.csv ├── scripts/ │ ├── getplot.py │ ├── mergedescriptives.py │ └── mergemetrics.py └── output/ ├── simulation/ │ └── Bos2018/ │ ├── metricssimBos20180.json │ ├── metricssimBos20186.json │ ├── metricssimBos2018559.json │ ├── metricssimBos20181640.json │ ├── metricssimBos20183154.json │ ├── metricssimBos20183518.json │ ├── metricssimBos20183519.json │ ├── metricssimBos20183721.json │ ├── metricssimBos20184612.json │ ├── metricssimBos20184699.json │ ├── metricssimBos20185673.json │ ├── plotrecallsimBos2018.png │ ├── descriptives/ │ │ ├── wordcloudBos2018.png │ │ ├── wordcloudirrelevantBos2018.png │ │ ├── wordcloudrelevantBos2018.png │ │ └── datastatsBos2018.json │ └── statefiles/ │ ├── simBos20180.asreview │ ├── simBos20186.asreview │ ├── simBos2018559.asreview │ ├── simBos20181640.asreview │ ├── simBos20183154.asreview │ ├── simBos20183518.asreview │ ├── simBos20183519.asreview │ ├── simBos20183721.asreview │ ├── simBos20184612.asreview │ ├── simBos20184699.asreview │ └── simBos20185673.asreview └── tables/ ├── datadescriptives.csv ├── datadescriptives.xlsx ├── datametrics.csv └── datametrics.xlsx

8 directories, 38 files ```

scitree function for Python

The scitree function in Python prints the tree for the current folder (".").

```python from scitree import scitree

scitree() ```

License

MIT

Contact

Feel free to reach out with questions, remarks, and suggestions. The issue tracker is a good starting point. You can also email me at jonathandebruinos@gmail.com.

Owner

  • Name: Jonathan de Bruin
  • Login: J535D165
  • Kind: user
  • Location: Netherlands
  • Company: Utrecht University

Research engineer working on software, datasets, and tools to advance open science 👐 @UtrechtUniversity @asreview

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "De Bruin"
  given-names: "Jonathan"
  orcid: "https://orcid.org/0000-0002-4297-0502"
title: "Scitree - Like tree, but optimized for science"
url: "https://github.com/J535D165/scitree"
repository-code: "https://github.com/J535D165/scitree"

GitHub Events

Total
  • Watch event: 1
Last Year
  • Watch event: 1

Committers

Last synced: almost 2 years ago

All Time
  • Total Commits: 34
  • Total Committers: 2
  • Avg Commits per committer: 17.0
  • Development Distribution Score (DDS): 0.029
Past Year
  • Commits: 34
  • Committers: 2
  • Avg Commits per committer: 17.0
  • Development Distribution Score (DDS): 0.029
Top Committers
Name Email Commits
Jonathan de Bruin j****s@g****m 33
Jelle Teijema j****a@g****m 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 5
  • Total pull requests: 3
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 10 days
  • Total issue authors: 2
  • Total pull request authors: 2
  • Average comments per issue: 2.4
  • Average comments per pull request: 1.33
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • vankesteren (3)
  • jteijema (2)
Pull Request Authors
  • jteijema (2)
  • J535D165 (1)
Top Labels
Issue Labels
Pull Request Labels
bug (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 10,455 last-month
  • Total docker downloads: 47
  • Total dependent packages: 1
  • Total dependent repositories: 1
  • Total versions: 3
  • Total maintainers: 1
pypi.org: scitree

One downloader for many scientific data and code repositories!

  • Versions: 3
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 10,455 Last month
  • Docker Downloads: 47
Rankings
Docker downloads count: 3.1%
Downloads: 3.3%
Dependent packages count: 4.8%
Average: 8.2%
Dependent repos count: 21.5%
Maintainers (1)
j535d165
Last synced: 4 months ago

Dependencies

.github/workflows/python-lint.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v1 composite
.github/workflows/python-package.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
.github/workflows/python-publish.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
  • pypa/gh-action-pypi-publish release/v1 composite
pyproject.toml pypi
  • gitignorefile *
  • natsort *
  • scisort *
  • seedir *