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https://github.com/ccrgeneticsbranch/oncogenomics-tools-docker

https://github.com/ccrgeneticsbranch/oncogenomics-tools-docker

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: CCRGeneticsBranch
  • Language: Dockerfile
  • Default Branch: main
  • Size: 3.91 KB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 1
  • Open Issues: 1
  • Releases: 0
Created about 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme

README.md

oncogenomics-tools-docker

  1. clone docker repo git clone https://github.com/CCRGeneticsBranch/oncogenomics-tools-docker cd oncogenomics-tools-docker
  2. clone oncogenomics tools git clone https://github.com/CCRGeneticsBranch/oncogenomics-tools app

  3. create .env file ``` FLASKSECRETKEY= TIER="dev" HOME_URI=oncogenomics-tools.cancer.gov MOUNT=/mnt/otl

    mysql

    DATABASE_URL=

    iTrust

    OAUTHISSUER=https://stsstg.nih.gov OAUTHCLIENT= OAUTH_SECRET=

    AUTHENDPOINT=/auth/oauth/v2/authorize TOKENENDPOINT=/auth/oauth/v2/token USERINFO_ENDPOINT=/openid/connect/v1.1/userinfo ```

  4. build image ./build.sh

  5. startup/shutdown server ``` ./up.sh or ./down.sh

```

Owner

  • Name: CCR Genetics Branch
  • Login: CCRGeneticsBranch
  • Kind: organization

Genomics, and epigenetic pipelines developed by the OncoGenomics Section of the Genetics Branch, CCR.

GitHub Events

Total
  • Push event: 3
  • Pull request event: 1
  • Fork event: 1
  • Create event: 2
Last Year
  • Push event: 3
  • Pull request event: 1
  • Fork event: 1
  • Create event: 2

Dependencies

Dockerfile docker
  • debian 11-slim build
docker-compose.yml docker
  • hsienchao/oncogenomics-tools latest