https://github.com/cda-tum/mmft-ooc-designer
Design automation solution for organs-on-chip.
Science Score: 54.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: ieee.org -
✓Committers with academic emails
1 of 2 committers (50.0%) from academic institutions -
✓Institutional organization owner
Organization cda-tum has institutional domain (www.cda.cit.tum.de) -
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.9%) to scientific vocabulary
Repository
Design automation solution for organs-on-chip.
Basic Info
- Host: GitHub
- Owner: cda-tum
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Size: 1.27 MB
Statistics
- Stars: 19
- Watchers: 4
- Forks: 2
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Design Automation for Organs-on-a-chip
A design automation tool for multi-organs-on-chip developed by the Chair for Design Automation at the Technical University of Munich as part of the Munich MicroFluidic Toolkit (MMFT). The method considers the orchestration of several aspects, like the size of organ modules, the required shear stress on membranes, the dimensions and geometry of channels, pump pressures, etc., and uses that to generate an initial design. This can then be translated to a 2D network as well as extruded and exported as a 3D geometry of the microfluidic channel network for subsequent simulations or the desired device including the chip specifications for fabrication.
Tutorial
A detailed tutorial is available through the included Jupyter Notebook and templates can be found in the architectures directory.
More details about the implementation can be found in:
[1] M. Emmerich, P. Ebner, and R. Wille. Automated Design for Multi-Organ-on-Chip Geometries. In IEEE Transactions on Computer Aided Design of Integrated Circuits and Systems (TCAD), 2024.
[2] M. Emmerich, P. Ebner, and R. Wille. Design Automation for Organs-on-Chip. In Design, Automation and Test in Europe (DATE). 2024.
For more information about our work on Microfluidics, please visit https://www.cda.cit.tum.de/research/microfluidics/.
If you have any questions, feel free to contact us via microfluidics.cda@xcit.tum.de or by creating an issue on GitHub.
System Requirements
Tested with Python 3.9.14.
bash
pip install -r docs/requirements.txt
Run
To run the script via the command line type:
bash
python ooc_da.py inputfile.json outputfile.json
Then generate the geometry, you can type: (make sure to alter the respective values in the function call)
bash
python OOCGernerator.py
Example
bash
python ooc_da.py architectures/ooc_male_simple.json outputconfig.json
Owner
- Name: Chair for Design Automation, TU Munich
- Login: cda-tum
- Kind: organization
- Location: Germany
- Website: https://www.cda.cit.tum.de
- Repositories: 22
- Profile: https://github.com/cda-tum
The CDA provides expertise for all main steps in the design and realization of integrated circuits, embedded systems, as well as cyber-physical systems.
GitHub Events
Total
- Watch event: 4
- Push event: 2
Last Year
- Watch event: 4
- Push event: 2
Committers
Last synced: 10 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| emmerich | m****h@t****e | 30 |
| Philipp Ebner | 2****r | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- MariaEmmerich (3)