https://github.com/cdcgov/ww-inference-model - v0.1.1

What's Changed

• Positive constrain mode_sigma_ww_site by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/210
• Setup pkgdown so it hosts release and dev sites by @gvegayon in https://github.com/CDCgov/ww-inference-model/pull/212
• Issue 200: Modify plot methods by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/218
• fix link by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/231
• Issue 197: rename validate_both_datasets function by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/219
• Replacing artifact and setting retention days to 7 by @gvegayon in https://github.com/CDCgov/ww-inference-model/pull/230
• Check unique values of site_pop per site by @gvegayon in https://github.com/CDCgov/ww-inference-model/pull/232
• [Hot fix] test when pop size is not constant was failing by @gvegayon in https://github.com/CDCgov/ww-inference-model/pull/235
• Issue 184: Add outputs to generate_simulated_data() fxn and package data by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/220
• Issue 238: Fix plot bug by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/239
• Issue 245: fix y-axis scaling on subpop_rt plot by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/247
• Issue 248: Add package workflow diagram to readme by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/249
• Modify priors on eta_sd and inf_feedback by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/236
• Prep for release by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/251

Full Changelog: https://github.com/CDCgov/ww-inference-model/compare/v0.1.0...v0.1.1

- R
Published by kaitejohnson over 1 year ago

https://github.com/cdcgov/ww-inference-model - v0.1.0

What's Changed

• Format as package by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/1
• Add some model components by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/5
• Port over the existing tests and set up CI by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/11
• README and model definition draft by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/7
• 10 add hosp admissions only model functionality by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/24
• Quick fix to R(t) plots and markdown rendering by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/40
• Input hospital admissions and wastewater data checks by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/37
• Example set of tests for flag_as_ww_outliers() by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/36
• geomline => geomstep by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/62
• Testing for key functions by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/54
• Hot fix edits while reviewing by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/72
• Minor formatting changes by @akeyel in https://github.com/CDCgov/ww-inference-model/pull/73
• Modularize the functions in the generate_simulated_data() function by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/29
• 42 parameterize weekday effect with a dirichlet by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/74
• Update r-cmd-check.yaml by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/78
• Update pkgdown.yaml by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/80
• Edit author list by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/87
• Fix params docs in wwinference.R by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/81
• Fix ignored compute_likelihood bug by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/113
• Change names of PMFs by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/114
• Add non-dev install instructions by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/103
• Fix how hierarchical sd values are computed by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/117
• Adding class and methods for wwinference model fit by @gvegayon in https://github.com/CDCgov/ww-inference-model/pull/58
• Addressing R CMD check notes due to tidyeval syntax by @gvegayon in https://github.com/CDCgov/ww-inference-model/pull/108
• update hierarchical estimate of sigmasite in `modeldefinition` by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/120
• Vignette tweaks by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/141
• Set seeds in testgetstan_data by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/146
• Modify package to expect log scale concentration values and LODs by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/122
• Tweaks to model definition by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/134
• Fix check for required wastewater columns by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/127
• Switch to placing prior on and inferring i/n at the first observed timepoint by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/85
• update vignette to reflect default NULL seed in mcmcoptions by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/125
• Fix NEWS.md by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/126
• update author list by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/156
• Adding new class and method for get_draws by @gvegayon in https://github.com/CDCgov/ww-inference-model/pull/153
• Add contributors by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/160
• 163 expand R version by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/164
• Add hex logo to repo by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/148
• Various bug fixes by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/128
• fix rendering to katex, add mathcal Rt to vignette by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/169
• Tweaks to main vignette by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/170
• Adding the post-page-artifact job by @gvegayon in https://github.com/CDCgov/ww-inference-model/pull/181
• Build link comment in PRs: update comment instead of re-creating on rebuilds by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/182
• Only run post-page-artifact job on PRs by @dylanhmorris in https://github.com/CDCgov/ww-inference-model/pull/183
• Fix formatting so functions link by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/179
• 174 cmdstanr sample args by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/175
• Hot fix validate pmf by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/191
• Restructure hierarchical estimation based on reference subpopulation by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/158
• hot-fix initialization misspecifies parameter name for error_rt_subpop by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/199
• add multiple os to matrix strategy by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/190
• Update NEWS.md by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/205
• Update README.md by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/207
• Edit description with release tag by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/203
• Fix error messaging when data extends beyond forecast date by @kaitejohnson in https://github.com/CDCgov/ww-inference-model/pull/208

New Contributors

• @akeyel made their first contribution in https://github.com/CDCgov/ww-inference-model/pull/73

Full Changelog: https://github.com/CDCgov/ww-inference-model/commits/v0.1.0

- R
Published by kaitejohnson over 1 year ago