spades4dummies
A SpaDES crash-course with two tutorials
Science Score: 67.0%
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✓CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: wiley.com -
○Academic email domains
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○Scientific vocabulary similarity
Low similarity (12.2%) to scientific vocabulary
Repository
A SpaDES crash-course with two tutorials
Basic Info
- Host: GitHub
- Owner: CeresBarros
- Language: R
- Default Branch: master
- Homepage: https://ceresbarros.github.io/SpaDES4Dummies/
- Size: 181 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 4
- Open Issues: 1
- Releases: 5
Metadata Files
README.md
SpaDES4Dummies
A SpaDES crash-course
This guide is an introduction to the SpaDES R modelling platform. It covers how to make and link SpaDES modules using SpaDES in two examples. Both examples draw on basic uses of statistical models in ecology, notably the relationships between environmental variables and species abundance and presence.
The guide can be accessed here, and it is divided in two parts.
Part 1 is very minimal, and uses only randomly generated data (no dowloading necessary). It is meant to introduce users creating and linking SpaDES modules, introducing the different parts of a module and how a SpaDES model (i.e. group of linked modules) works.
Part 2 uses real and freely available data (that is downloaded by the created modules), and provides a deeper look into several useful aspects of SpaDES, such as automatically downloading and pre-processing spatial data and caching. This example also covers several good practices in the context of developing and sharing models built with SpaDES.
See also:
News:
v1.4.0 - transition to Quarto - a few minor textual changes
v1.3.0
- Updates for R 4.3 and new package versions
- raster to terra transition
- several GitHub-Actions-related fixes
- automated testing via GitHub Actions implementated
v1.2.0 - Part2 as published in Barros et al 2023 - https://doi.org/10.5281/ZENODO.7154710
v.1.1.0 (Non-existing version)
v1.0.0 - First stable version
Happy SpaDESing!
Owner
- Name: Ceres Barros
- Login: CeresBarros
- Kind: user
- Website: ceresbarros.wordpress.com
- Twitter: CeresBarros
- Repositories: 12
- Profile: https://github.com/CeresBarros
Quantitative ecologist interested in ecosystem stability and resilience to global change
Citation (CITATION.cff)
# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.5.0
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
cff-version: 1.2.0
message: 'To cite package "SpaDES4Dummies" in publications use:'
type: software
license: GPL-3.0-only
title: 'SpaDES4Dummies: A SpaDES tutorial for begginners'
version: 1.3.0
abstract: This guide is an introduction to the `SpaDES` `R` modelling platform. It
covers how to make and link `SpaDES` modules using `SpaDES` in two examples. Both
examples draw on basic uses of statistical models in ecology, notably the relationships
between environmental variables and species abundance and presence.
authors:
- family-names: Barros
given-names: Ceres
email: ceres.barros@gov.bc.ca
orcid: https://orcid.org/0000-0003-4036-977X
- family-names: Micheletti
given-names: Tati
email: tati.micheletti@gmail.com
orcid: https://orcid.org/0000-0003-4838-8342
- family-names: Chubaty
given-names: Alex M
email: achubaty@for-cast.ca
orcid: https://orcid.org/0000-0001-7146-8135
repository-code: https://github.com/CeresBarros/SpaDES4Dummies
url: https://ceresbarros.github.io/SpaDES4Dummies/
date-released: '2023-09-05'
contact:
- family-names: Barros
given-names: Ceres
email: ceres.barros@gov.bc.ca
orcid: https://orcid.org/0000-0003-4036-977X
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 9
- Total pull requests: 15
- Average time to close issues: 9 months
- Average time to close pull requests: about 2 months
- Total issue authors: 4
- Total pull request authors: 4
- Average comments per issue: 2.22
- Average comments per pull request: 0.27
- Merged pull requests: 11
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- CeresBarros (4)
- achubaty (3)
- tpgjs66 (1)
- Kenkleinman (1)
Pull Request Authors
- CeresBarros (9)
- tati-micheletti (3)
- achubaty (3)
- ianmseddy (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- JamesIves/github-pages-deploy-action v4 composite
- PredictiveEcology/actions/install-spatial-deps main composite
- actions/cache v3 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- r-lib/actions/setup-tinytex v2 composite
- PredictiveEcology/actions/install-spatial-deps main composite
- actions/checkout v3 composite
- actions/setup-java v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- R >= 4.3 depends
- SpaDES * imports
- SpaDES.experiment * imports
- SpaDES.tools * imports
- bookdown * imports
- geodata * imports
- ggplot2 * imports
- htmlwidgets * imports
- png * imports
- quickPlot >= 1.0.2 imports
- raster * imports
- rcmdcheck * imports
- rmarkdown * imports
- rsvg * imports