https://github.com/cdcgov/vapintr

https://github.com/cdcgov/vapintr

Science Score: 13.0%

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Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: CDCgov
  • License: apache-2.0
  • Language: R
  • Default Branch: main
  • Size: 1.57 MB
Statistics
  • Stars: 2
  • Watchers: 3
  • Forks: 3
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme Contributing License Code of conduct

README.md

Project Status: Active - The project has reached a stable, usable
state and is being actively
developed. R build
status CRAN
status Lifecycle:
stable <!-- badges: end -->

vapintr

About

This package was developed to enable Monte Carlo simulation of the Johnson & Ettinger groundwater vapor intrusion model tool version 6 as developed by EPA (EPA 2020).

The motivation was that to analyze multiple chemicals across multiple buildings, with uncertain parameters, a Monte Carlo simulation would allow for the effects of multiple uncertain parameters to be considered simultaneously in probabilistic estimates of exposure.

The vapintr package was built step wise from the original Johnson and Ettinger Model Spreadsheet Tool, Version 6.0 (XLS) set to the groundwater source catagory. Note, vapintr does not directly support soil gas source measurements. We anticipate a future enhancement will add this feature.

Introduction to vapintr

Design philosophy

Where possible were initial coded from the official EPA J&E model spreadsheet tool. Modification were needed to accommodate the mc2d package in some functions. Functions are designed to operate independent of each other. This allows the maximum amount of granularity in any simulation.

Future improvements

TBD.

Background and Motivation

The purpose of this vignette is to illustrate the use of the vapintr package with both a deterministic variables and with a Monte Carlo simulation. For the deterministic analysis, both central tendency estimates (CTE) and reasonable maximum estimate (RME) inputs are provided.

Inputs are provided in an example Microsoft Excel workbook. We will combine the results of the two analysis for comparison purposes.

Installation

To install vapintr:

r devtools::install_git("https://github.com/CDCgov/vapintr", ref = "main", build_vignettes = TRUE, build_manual = TRUE)

Public Domain Standard Notice

This repository constitutes a work of the United States Government and is not subject to domestic copyright protection under 17 USC § 105. This repository is in the public domain within the United States, and copyright and related rights in the work worldwide are waived through the CC0 1.0 Universal public domain dedication. All contributions to this repository will be released under the CC0 dedication. By submitting a pull request you are agreeing to comply with this waiver of copyright interest.

License Standard Notice

The repository utilizes code licensed under the terms of the Apache Software License and therefore is licensed under ASL v2 or later.

This source code in this repository is free: you can redistribute it and/or modify it under the terms of the Apache Software License version 2, or (at your option) any later version.

This source code in this repository is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache Software License for more details.

You should have received a copy of the Apache Software License along with this program. If not, see http://www.apache.org/licenses/LICENSE-2.0.html

The source code forked from other open source projects will inherit its license.

Privacy Standard Notice

This repository contains only non-sensitive, publicly available data and information. All material and community participation is covered by the Disclaimer and Code of Conduct. For more information about CDC’s privacy policy, please visit http://www.cdc.gov/other/privacy.html.

Contributing Standard Notice

Anyone is encouraged to contribute to the repository by forking and submitting a pull request. (If you are new to GitHub, you might start with a basic tutorial.) By contributing to this project, you grant a world-wide, royalty-free, perpetual, irrevocable, non-exclusive, transferable license to all users under the terms of the Apache Software License v2 or later.

All comments, messages, pull requests, and other submissions received through CDC including this GitHub page may be subject to applicable federal law, including but not limited to the Federal Records Act, and may be archived. Learn more at http://www.cdc.gov/other/privacy.html.

Records Management Standard Notice

This repository is not a source of government records, but is a copy to increase collaboration and collaborative potential. All government records will be published through the CDC web site.

Owner

  • Name: Centers for Disease Control and Prevention
  • Login: CDCgov
  • Kind: organization
  • Email: data@cdc.gov
  • Location: Atlanta, GA

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.

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Dependencies

.github/workflows/check-standard.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 2.10 depends
  • DT * imports
  • config >= 0.3.1 imports
  • cowplot * imports
  • dplyr * imports
  • fitdistrplus * imports
  • ggpattern * imports
  • ggplot2 * imports
  • golem >= 0.4.1 imports
  • grDevices * imports
  • lubridate * imports
  • magrittr * imports
  • mc2d >= 0.1.18 imports
  • methods * imports
  • openxlsx * imports
  • rlang * imports
  • scales * imports
  • sf * imports
  • shiny >= 1.7.4 imports
  • shinyalert * imports
  • shinyjs * imports
  • stats * imports
  • stringr * imports
  • writexl * imports
  • zip * imports
  • knitr * suggests
  • readxl * suggests
  • rmarkdown * suggests
  • testthat * suggests