Overview

This repository contains code required to reproduce results from the following paper:

SE Morris*, CM Zipfel*, K Peer, ZJ Madewell, S Brenner, S Garg, P Paul, RB Slayton, M Biggerstaff. Modeling the impacts of antiviral prophylaxis strategies in mitigating seasonal influenza outbreaks in nursing homes. Clinical Infectious Diseases 2023; DOI 10.1093/cid/ciad764.

*Contributed equally

There are no original data associated with this work.

The findings and conclusions of this report are those of the authors and do not necessarily represent the official position of the Centers for Disease Control and Prevention.

Quick-start guide

Scripts to reproduce each figure are located in rscripts/.

Equations and parameters for the baseline model are given in rscripts/eqns.R and rscripts/parameters.R, respectively.

Additional information

Questions can be directed to Sinead Morris (run7@cdc.gov) or Casey Zipfel (ruv5@cdc.gov).

Public Domain Standard Notice

This repository constitutes a work of the United States Government and is not subject to domestic copyright protection under 17 USC § 105. This repository is in the public domain within the United States, and copyright and related rights in the work worldwide are waived through the CC0 1.0 Universal public domain dedication. All contributions to this repository will be released under the CC0 dedication. By submitting a pull request you are agreeing to comply with this waiver of copyright interest.

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The repository utilizes code licensed under the terms of the Apache Software License and therefore is licensed under ASL v2 or later.

This source code in this repository is free: you can redistribute it and/or modify it under the terms of the Apache Software License version 2, or (at your option) any later version.

This source code in this repository is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache Software License for more details.

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The source code forked from other open source projects will inherit its license.

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