https://github.com/cdcgov/sars-cov-2-naat-and-antigen-testing-algorithms
https://github.com/cdcgov/sars-cov-2-naat-and-antigen-testing-algorithms
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
✓Academic publication links
Links to: medrxiv.org -
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○Scientific vocabulary similarity
Low similarity (6.0%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: CDCgov
- Language: R
- Default Branch: master
- Size: 7.81 KB
Statistics
- Stars: 1
- Watchers: 3
- Forks: 3
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
SARS-CoV-2 NAAT and Antigen Testing Algorithms
These files can be used to reproduce the testing algorithms and simulations described in the article Quantitative Comparison of SARS-CoV-2 Nucleic Acid Amplification Test and Antigen Testing Algorithms: A Decision Analysis Simulation Model.
The R file AlgorithmFunctions.R contains the codes defining each algorithm described in the article:
- NAAT Only
- Antigen Only
- NAAT Confirmation for Symptomatic Antigen-Negative and Asymptomatic Antigen-Positive Results
- NAAT Confirmation of Negative Antigen Results
- Repeat Antigen Confirmation of Antigen-Negative Results
- NAAT for Asymptomatic Persons & Symptomatic Persons with Positive Antigen Results
The R file AlgorithmSimulations.R calls AlgorithmFunctions.R to perform a specified number of simulations of each algorithm at different levels of prevalence.
The CSV file InputParameterRanges.csv is used to specify the distribution function for each input parameter's random sample. It is also called by AlgorithmSimulations.R.
Owner
- Name: Centers for Disease Control and Prevention
- Login: CDCgov
- Kind: organization
- Email: data@cdc.gov
- Location: Atlanta, GA
- Website: http://open.cdc.gov/
- Twitter: CDCgov
- Repositories: 114
- Profile: https://github.com/CDCgov
CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
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