Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/cellgeni/nf-modules

https://github.com/cellgeni/nf-modules

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: cellgeni
  • License: mit
  • Language: Python
  • Default Branch: main
  • Size: 36.5 MB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created about 1 year ago · Last pushed 10 months ago
Metadata Files
Readme License

README.md

nf-modules

Prerequisites

  • nf-core tools: module load cellgen/nf-core/3.3.2

Usage

List all modules

This will show all all the modules available in the repository. bash nf-core modules -g https://github.com/cellgeni/nf-modules.git list remote

List all subworkflows

This will show all the subworkflows available in the repository. bash nf-core subworkflows -g https://github.com/cellgeni/nf-modules.git list remote

Install a subworkflow

This will install a subworkflow, along with the used modules, from the repository. so, you shouldn't manually install modules from the repository unless is not used in a subworkflow. bash nf-core subworkflows -g https://github.com/cellgeni/nf-modules.git install <subworkflow_name>

Install a module

If the module is not used in a subworkflow, you can install it directly from the repository. bash nf-core modules -g https://github.com/cellgeni/nf-modules.git install <module_name>

List installed modules

This will show all the modules installed in your local repository. bash nf-core modules -g https://github.com/cellgeni/nf-modules.git list local

Remove a module

If you want to remove a module, you can do it with the following command: bash nf-core modules -g https://github.com/cellgeni/nf-modules.git remove <module_name>

List all installed subworkflows

This will show all the subworkflows installed in your local repository. bash nf-core subworkflows -g https://github.com/cellgeni/nf-modules.git list local

Remove a subworkflow

If you want to remove a subworkflow, you can do it with the following command: bash nf-core subworkflows -g https://github.com/cellgeni/nf-modules.git remove <subworkflow_name>

GitHub Events

Total
  • Delete event: 2
  • Issue comment event: 2
  • Push event: 102
  • Public event: 1
  • Pull request review comment event: 16
  • Pull request review event: 10
  • Pull request event: 2
  • Create event: 4
Last Year
  • Delete event: 2
  • Issue comment event: 2
  • Push event: 102
  • Public event: 1
  • Pull request review comment event: 16
  • Pull request review event: 10
  • Pull request event: 2
  • Create event: 4