https://github.com/cellgeni/hackathon

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (1.2%) to scientific vocabulary

Last synced: 10 months ago · JSON representation

Repository

Basic Info

Host: GitHub
Owner: cellgeni
Language: Python
Default Branch: main
Size: 12.6 MB

Statistics

Stars: 0
Watchers: 0
Forks: 0
Open Issues: 0
Releases: 0

Created about 1 year ago · Last pushed about 1 year ago

Metadata Files

Readme

Hackaton pipeline

Running the pipeline:

```bash samplesheet="example/samplesheet.csv" metadata="example/metadatasplited.csv" embedding="example/projection.csv" delimiter=""

nextflow run main.nf \ --samplesheet "$samplesheet" \ --metadata "$metadata" \ --delimiter "_" \ --method "umap" \ --vislabel "celltype" \ --embedding $embedding \ --embedding_name "tsne" \ -resume ```

Owner

Name: Cellular Genetics Informatics
Login: cellgeni
Kind: organization
Location: United Kingdom

Website: https://www.sanger.ac.uk/science/groups/cellular-genetics-informatics
Repositories: 19
Profile: https://github.com/cellgeni

Wellcome Sanger Institute

GitHub Events

Total

Push event: 5
Pull request event: 3
Create event: 3

Last Year

Push event: 5
Pull request event: 3
Create event: 3

ecosyste.ms

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Open Source Science