https://github.com/cellgeni/tracer-utils
This repository contains scripts for running the Teichlab/tracer package.
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.5%) to scientific vocabulary
Repository
This repository contains scripts for running the Teichlab/tracer package.
Basic Info
- Host: GitHub
- Owner: cellgeni
- License: mit
- Language: Shell
- Default Branch: main
- Size: 8.79 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
tracer-utils
Scripts
This repository contains scripts for running the Teichlab/tracer package.
bsub-tracer-assemble.sh - submits tracer assemble to be executed on the farm (do first)
bsub-tracer-summarise.sh - submits tracer summarise to be executed on the farm (do second)
Dockerfile
To build a working singularity image for tracer, ensure your environment has docker and singularity installed. Then do the following:
1) git clone https://github.com/SimonDMurray/tracer.git (this pull request is yet to be merged)
2) cd tracer
3) docker build -t tracer:v0.6 .
4) sudo singularity build tracer_v0.6.sif docker-daemon://tracer:v0.6
Owner
- Name: Cellular Genetics Informatics
- Login: cellgeni
- Kind: organization
- Location: United Kingdom
- Website: https://www.sanger.ac.uk/science/groups/cellular-genetics-informatics
- Repositories: 19
- Profile: https://github.com/cellgeni
Wellcome Sanger Institute