Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/certara/simcyp-r-scripts

Simcyp R example scripts

https://github.com/certara/simcyp-r-scripts

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: pubmed.ncbi, ncbi.nlm.nih.gov, frontiersin.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.8%) to scientific vocabulary

Keywords

pbpk pbpk-modeling
Last synced: 6 months ago · JSON representation

Repository

Simcyp R example scripts

Basic Info
  • Host: GitHub
  • Owner: certara
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 62.6 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Topics
pbpk pbpk-modeling
Created over 2 years ago · Last pushed 6 months ago
Metadata Files
Readme

README.md

Simcyp R Example Scripts

Description

A package to support R script interactions with the Simcyp simulator (V22-V24). Provides functions to initialise Simcyp, load and modify workspaces and interrogate results.

System Requirements

  • Windows 10
  • Simcyp Simulator license
  • R >= 4.4.2

Installation

The Simcyp R Package requires additional package dependencies, which can first be installed from CRAN using the following command:

r install.packages(c("Rcpp", "XML", "xml2", "RcppThread", "R.utils", "RSQLite", "DBI", "rlang", "tibble", "fs", "PKNCA", "dplyr", "stringr", "ggplot2", "pracma", "rstudioapi"))

The Simcyp R package is distributed from Simcyp support via a download link and can be requested from simcyp.support@certara.com.

First, download the package archive file from the Simcyp download portal, then navigate to RStudio > Tools > Install Packages. In the "Install from:" dropdown selection, change to "Package archive file" and select the Simcyp R package .zip file in your file explorer.

The current Released Version of the Simcyp R package is Simcyp_24.0.18.zip.

Examples

Navigate to one of the example folders within the repository to view usage details.

Support

Please email simcyp.support@certara.com for any queries.

Learning material:

If you are a Simcyp license members, E-Learning videos can be viewed via your members area.

Other learning videos can be found on YouTube:

Publications:

Owner

  • Name: Certara USA, Inc.
  • Login: certara
  • Kind: organization
  • Email: github-admins@certara.com

GitHub Events

Total
  • Push event: 4
  • Public event: 1
Last Year
  • Push event: 4
  • Public event: 1