individual - v0.1.18

What's Changed

• Allow only some processes to be named and not others. by @plietar in https://github.com/mrc-ide/individual/pull/203
• Update benchmarking documentation in contributing.md by @giovannic in https://github.com/mrc-ide/individual/pull/209
• adding get_values to CategoricalVariable and making a new function for IntegrerVariable by @JasonRWood in https://github.com/mrc-ide/individual/pull/207
• Add bitsetcountand by @cwhittaker1000 in https://github.com/mrc-ide/individual/pull/206

New Contributors

• @JasonRWood made their first contribution in https://github.com/mrc-ide/individual/pull/207
• @cwhittaker1000 made their first contribution in https://github.com/mrc-ide/individual/pull/206

Full Changelog: https://github.com/mrc-ide/individual/compare/v0.1.17...v0.1.18

Scientific Software - Peer-reviewed - R
Published by giovannic 6 months ago

individual - v0.1.17

• Add a copy_from method to the Bitset class.
• Improve performance of bitset operations by making num_bits a compile-time constant expression.
• Support vectors of logicals as an argument to filter_bitset.
• Allow processes to be named, in order to produce more useful call stacks.

Scientific Software - Peer-reviewed - R
Published by plietar over 1 year ago

individual - v0.1.16

• Allow events and variables to be added when restoring the simulation

Scientific Software - Peer-reviewed - R
Published by plietar almost 2 years ago

individual - v0.1.15

• Added an all.equal implementation for bitsets.

Scientific Software - Peer-reviewed - R
Published by plietar almost 2 years ago

individual - v0.1.14

• Added a flag to the Event constructor to tweak the restore semantics.
• Replaced the Bitset R6 class with named lists, making them faster to instantiate.
• Replaced the bitset sampling implementation with a faster algorithm.
• Various other performance improvements, mostly avoiding copies of vectors.

Scientific Software - Peer-reviewed - R
Published by plietar almost 2 years ago

individual - v0.1.13

• Fixed the website generation.
• Fix an uninitialized memory-read that could cause spurious event triggers.

Scientific Software - Peer-reviewed - R
Published by plietar about 2 years ago

individual - v0.1.12

Simulation state can be saved and restored, allowing the simulation to be resumed.

Scientific Software - Peer-reviewed - R
Published by plietar about 2 years ago

individual - v0.1.11

Performance optimisations for rendering

Scientific Software - Peer-reviewed - R
Published by giovannic about 2 years ago

individual - v0.1.10

• Vector-based updates are consolidated into one place
• Resizing memory bug fixed
• Simplifed RaggedVariable instantiations to aliases until implementations are implemented

Scientific Software - Peer-reviewed - R
Published by giovannic over 3 years ago

individual - v0.1.9

• All variables and targeted events are resizable
• Ragged variables for integers and doubles

Scientific Software - Peer-reviewed - R
Published by giovannic over 3 years ago

individual - v0.1.8

Changes:

• Fix bug that prevented event listeners implemented in C++ from functioning properly.

Scientific Software - Peer-reviewed - R
Published by slwu89 about 4 years ago

individual - v0.1.7

Changes:

• benchmarks for variables
• testthat fixes
• extra validation on categorical variables

Scientific Software - Peer-reviewed - R
Published by giovannic over 4 years ago

individual - v0.1.6

Specific release notes can be found in NEWS.md, but include updates to Event and TargetedEvent, small bug fixes, and updates to bitset$not behavior.

Scientific Software - Peer-reviewed - R
Published by slwu89 over 4 years ago

individual - v0.1.5

code cleanup and performance fixes

Scientific Software - Peer-reviewed - R
Published by giovannic over 4 years ago

individual - v0.1.4

Stability fixes and CRAN fixes

Scientific Software - Peer-reviewed - R
Published by giovannic over 4 years ago

individual - v0.1.3

• Speed improvements
• Resolve compiler warnings

Scientific Software - Peer-reviewed - R
Published by giovannic over 4 years ago

individual - v0.1.2

• Fixes for CRAN
• JOSS paper

Scientific Software - Peer-reviewed - R
Published by giovannic over 4 years ago

individual - v0.1.1

Changes:

• Default rendering outputs
• Updated documentation and vignettes
• Performance improvements for integer variables
• Fix memory leak
• Validation checks for category variables

Scientific Software - Peer-reviewed - R
Published by giovannic over 4 years ago

individual - Integer Variables

Scientific Software - Peer-reviewed - R
Published by giovannic over 4 years ago

individual - Stochastic scheduling

Scientific Software - Peer-reviewed - R
Published by giovannic over 5 years ago

individual - Refactor Rcpp out of create_state

Introduces breaking changes for creating variables. See documentation.

Should make simulation initialisation more stable.

Scientific Software - Peer-reviewed - R
Published by giovannic over 5 years ago

individual - Const find in IterableBitset

Scientific Software - Peer-reviewed - R
Published by giovannic over 5 years ago

individual - Mocking the CPP api

Scientific Software - Peer-reviewed - R
Published by giovannic over 5 years ago

individual -

Scientific Software - Peer-reviewed - R
Published by giovannic over 5 years ago

individual - 0.0.3

Scientific Software - Peer-reviewed - R
Published by giovannic over 5 years ago