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https://github.com/cfrioux/deadend_detector

Detection of deadends in metabolic networks

https://github.com/cfrioux/deadend_detector

Science Score: 13.0%

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Keywords

answer-set-programming bioinformatics metabolic-network systems-biology

Keywords from Contributors

archival projection interactive generic sequences observability autograding hacking shellcodes modular
Last synced: 5 months ago · JSON representation

Repository

Detection of deadends in metabolic networks

Basic Info
  • Host: GitHub
  • Owner: cfrioux
  • License: other
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 20.5 KB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Topics
answer-set-programming bioinformatics metabolic-network systems-biology
Created over 6 years ago · Last pushed over 2 years ago
Metadata Files
Readme Changelog Contributing License Authors

README.rst 

================
DeadEnd Detector
================


.. image:: https://img.shields.io/pypi/v/deadend_detector.svg
        :target: https://pypi.python.org/pypi/deadend_detector

.. image:: https://img.shields.io/travis/cfrioux/deadend_detector.svg
        :target: https://travis-ci.org/cfrioux/deadend_detector

.. image:: https://readthedocs.org/projects/deadend-detector/badge/?version=latest
        :target: https://deadend-detector.readthedocs.io/en/latest/?badge=latest
        :alt: Documentation Status


.. image:: https://pyup.io/repos/github/cfrioux/deadend_detector/shield.svg
     :target: https://pyup.io/repos/github/cfrioux/deadend_detector/
     :alt: Updates



A logic programming-based detector of dead-end reactions in metabolic networks


* Free software: GNU General Public License v3
* Documentation: https://deadend-detector.readthedocs.io.


Features
--------

Identifies the deadend metabolites from a metabolic network

* Never consumed metabolites
* Never produced metabolites

Credits
-------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage

Owner

  • Name: Clémence Frioux
  • Login: cfrioux
  • Kind: user
  • Location: Bordeaux
  • Company: Inria

Researcher - Bioinformatician

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