Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/cfsan-biostatistics/sra-tools

SRA Tools

https://github.com/cfsan-biostatistics/sra-tools

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: ncbi.nlm.nih.gov
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.9%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

SRA Tools

Basic Info
  • Host: GitHub
  • Owner: CFSAN-Biostatistics
  • License: other
  • Language: C
  • Default Branch: master
  • Size: 33.6 MB
Statistics
  • Stars: 0
  • Watchers: 5
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Fork of ncbi/sra-tools
Created over 8 years ago · Last pushed over 8 years ago

https://github.com/CFSAN-Biostatistics/sra-tools/blob/master/ 

# The NCBI SRA (Sequence Read Archive)

### Contact:
email: sra-tools@ncbi.nlm.nih.gov
or visit the [SRA Tools web site](http://ncbi.github.io/sra-tools)

### Download
Visit our [download page](https://github.com/ncbi/sra-tools/wiki/Downloads) for pre-built binaries.

### Change Log
Please check the CHANGES.md file for change history.

## The SRA Toolkit
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for
using data in the INSDC Sequence Read Archives.

### IMPORTANT ANNOUNCEMENT
As was announced in [OMB memorandum M-15-13](https://www.whitehouse.gov/sites/default/files/omb/memoranda/2015/m-15-13.pdf) on June 8, 2015, NCBI and all Federal systems will be transitioning to using HTTPS-only protocols before the end of 2016. This change will affect any software that uses NCBI APIs such as the E-utilities or NCBI software toolkits such as `sra-tools`, `ncbi-vdb` or `ngs`.

The NLM and NCBI may implement the switch to HTTPS-only as early as September 30, 2016.

In particular, software products that depend on `sra-tools`, `ncbi-vdb` or `ngs` may not function as expected after September 30 unless they are properly updated from this site or by the software provider.

If you use software that accesses NCBI SRA data in any way, your software will likely be affected by this change. Please check with your software provider for recent udpates or patches, and be sure to acquire these before September 30.
 
If you develop software that relies on `sra-tools`, `ncbi-vdb` or `ngs` in any way, you will likely need to update your code so that it accesses NCBI using HTTPS.

We have released new tools with version 2.8.0 that are HTTPS compatible and `M-15-13` compliant as of October 7, 2016. Please be certain to [update all of your binaries](https://github.com/ncbi/sra-tools/wiki/Downloads) and configuration files.

For additional information on using, configuring, and building the toolkit,
please visit our [wiki](https://github.com/ncbi/sra-tools/wiki)
or our web site at [NCBI](http://www.ncbi.nlm.nih.gov/Traces/sra/?view=toolkit_doc)


SRA Toolkit Development Team

Owner

  • Name: CFSAN (Center for Food Safety and Applied Nutrition)
  • Login: CFSAN-Biostatistics
  • Kind: organization

GitHub Events

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