datalad-dataverse

A DataLad (www.datalad.org) extension to work with Dataverse

https://github.com/datalad/datalad-dataverse

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
8 of 27 committers (29.6%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (17.4%) to scientific vocabulary

Keywords

closember datalad

Keywords from Contributors

rdm data-storage git-annex usable neuroimaging bids brain-imaging fmri brainweb data-standards

Last synced: 6 months ago · JSON representation ·

Repository

A DataLad (www.datalad.org) extension to work with Dataverse

Basic Info

Host: GitHub
Owner: datalad
License: other
Language: Python
Default Branch: main
Homepage:
Size: 1.64 MB

Statistics

Stars: 9
Watchers: 5
Forks: 14
Open Issues: 28
Releases: 4

Topics

closember datalad

Created over 3 years ago · Last pushed over 1 year ago

Metadata Files

Readme Changelog Contributing License Code of conduct Citation

DataLad extension for working Dataverse

Dataverse is open source research data repository software that is deployed all over the world as data or metadata repositories. It supports sharing, preserving, citing, exploring, and analyzing research data with descriptive metadata, and thus contributes greatly to open, reproducible, and FAIR science. DataLad, on the other hand, is a data management and data publication tool build on Git and git-annex. Its core data structure, DataLad datasets, can version control files of any size, and streamline data sharing, updating, and collaboration. This DataLad extension package provides interoperablity with Dataverse to support dataset transport to and from Dataverse instances.

Installation

```

create and enter a new virtual environment (optional)

$ virtualenv --python=python3 ~/env/dl-dataverse $ . ~/env/dl-dataverse/bin/activate

install from PyPi

$ python -m pip install datalad-dataverse ```

How to use

Additional commands provided by this extension are immediately available after installation. However, in order to fully benefit from all improvements, the extension has to be enabled for auto-loading by executing:

git config --global --add datalad.extensions.load dataverse

Doing so will enable the extension to also alter the behavior the core DataLad package and its commands, from example to be able to directly clone from a Dataverse dataset landing page.

Full-compatibility with Windows requires a git-annex installation of version 10.20230321 (or later).

Summary of functionality provided by this extension

Interoperability between DataLad and Dataverse version 5 (or later).
A add-sibling-dataverse command to register a Dataverse dataset as remote sibling for a DataLad dataset.
A git-annex-remote-dataverse special remote implementation for storage and retrieval of data in Dataverse dataset via git-annex.
These two features combined enable the deposition and retrieveal of complete DataLad dataset on Dataverse, including version history and metadata. A direct datalad clone from a Dataverse dataset landing page is supported, and yields a fully functional DataLad dataset clone (Git repository).

Contributors ✨

Thanks goes to these wonderful people (emoji key):

_{Johanna Bayer} 📖	_{Nadine Spychala} 🚇 📖	_{Benjamin Poldrack} 🚇 💻 📖 🚧 👀 🤔 🔧	_{Adina Wagner} 💻 🤔 🚇 📖 🚧 👀	_{Michael Hanke} 💻 🤔 🚧 🚇 👀 🔧	_enicolaisen 📖	_Roza 📖
_{Kelvin Sarink} 💻	_{Jan Ernsting} 💻	_{Chris Markiewicz} 💻	_{Alex Waite} 🚇 💻 🚧 🔧	_Shammi270787 💻	_{Wu Jianxiao} 💻 👀 📓	_{Laura Waite} 📖
_{Michał Szczepanik} 🚇	_{Benedikt Ehinger} 🐛 🚧

This project follows the all-contributors specification. Contributions of any kind welcome!

Acknowledgements

This DataLad extension was developed with support from the German Federal Ministry of Education and Research (BMBF 01GQ1905), the US National Science Foundation (NSF 1912266), the Helmholtz research center Jülich (RDM challenge 2022), and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under grant SFB 1451 (431549029, INF project).

Owner

Name: DataLad
Login: datalad
Kind: organization
Email: team@datalad.org
Location: USA&Germany

Website: http://datalad.org
Repositories: 97
Profile: https://github.com/datalad

Data distribution and management platform

Citation (CITATION.cff)

cff-version: 1.2.0
title: datalad-dataverse
message: If you use this software, please cite it using these metadata.
authors:
  - family-names: Poldrack
    given-names: Benjamin
    orcid: "https://orcid.org/0000-0001-7628-0801"
  - family-names: Wagner
    given-names: Adina
    orcid: "https://orcid.org/0000-0003-2917-3450"
  - family-names: Ernsting
    given-names: Jan
    affiliation: >-
      University of Münster, Institute for Translational Psychiatry, Münster, Germany;
      University of Münster, Faculty of Mathematics and Computer Science, Münster, Germany
    orcid: "https://orcid.org/0000-0003-4649-2111"
  - family-names: Hanke
    given-names: Michael
    orcid: "https://orcid.org/0000-0001-6398-6370"
  - family-names: Roza Gunes
    given-names: Bayrak
    affiliation: Vanderbilt University, Nashville, TN USA
    orcid: "https://orcid.org/0000-0002-7197-1248"
  - family-names: Sarink
    given-names: Kelvin
    affiliation: University of Münster, Institute for Translational Psychiatry, Münster, Germany
    orcid: "https://orcid.org/0000-0002-4840-5619"
  - family-names: Nicolaisen-Sobesky
    given-names: Eliana
    affiliation: "Institute of Neuroscience and Medicine (INM-7: Brain and Behaviour), Research Centre Jülich, Jülich, Germany."
    orcid: "https://orcid.org/0000-0002-4806-2863"
  - family-names: More
    given-names: Shammi
    orcid: "https://orcid.org/0000-0002-1272-217X"
  - family-names: Bayer
    given-names: Johanna
    affiliation: >-
      The University of Melbourne, Melbourne, Australia;
      Orygen Youth Health, Melbourne, Australia
    orcid: "https://orcid.org/0000-0003-4891-6256"
  - family-names: Markiewicz
    given-names: Christopher J
    affiliation: Stanford University
    orcid: "https://orcid.org/0000-0002-6533-164X"
  - family-names: Waite
    given-names: Alex
    orcid: "https://orcid.org/0000-0002-8402-6173"
  - family-names: Spychala
    given-names: Nadine
    orcid: "https://orcid.org/0000-0003-2582-9758"
  - family-names: Waite
    given-names: Laura
    orcid: "https://orcid.org/0000-0003-2213-7465"
  - family-names: Wu
    given-names: Jianxiao
    orcid: "https://orcid.org/0000-0002-4866-272X"
  - family-names: Mönch
    given-names: Christian
    orcid: "https://orcid.org/0000-0002-3092-0612"
  - family-names: Heunis
    given-names: Stephan
    orcid: "https://orcid.org/0000-0003-3503-9872"
keywords:
  - Computational reproducibility
  - reproducibility
  - Python
  - data management
  - workflow

GitHub Events

Total

Create event: 3
Release event: 1
Issues event: 4
Delete event: 1
Issue comment event: 11
Push event: 2
Pull request event: 3

Last Year

Create event: 3
Release event: 1
Issues event: 4
Delete event: 1
Issue comment event: 11
Push event: 2
Pull request event: 3

Committers

Last synced: about 2 years ago

All Time

Total Commits: 466
Total Committers: 27
Avg Commits per committer: 17.259
Development Distribution Score (DDS): 0.532

Past Year

Commits: 198
Committers: 11
Avg Commits per committer: 18.0
Development Distribution Score (DDS): 0.394

Top Committers

Name	Email	Commits
Michael Hanke	m**e@g**m	218
Adina Wagner	a**r@t**e	61
Benjamin Poldrack	b**k@g**m	46
allcontributors[bot]	4****]	34
Jan Ernsting	j**g@u**e	14
Christian Monch	c**h@w**e	14
John T. Wodder II	g**t@v**g	13
enicolaisen	e**n@g**m	10
Yaroslav Halchenko	d**n@o**m	9
Kelvin Sarink	k**k@u**e	8
Michał Szczepanik	m**k@f**e	6
Wu Jianxiao	j**a@g**m	6
Stephan Heunis	s**s@f**e	5
Roza	2****k	4
Benjamin Poldrack	b****k	4
Nadine	n**a@g**m	2
Johanna Bayer	j**r@o**u	2
Alex Waite	a**x@w**u	1
Laura Waite	l**a@w**u	1
Chris Markiewicz	e**s@g**m	1
Matthias Riße	m**e@f**e	1
Christopher J. Markiewicz	m**z@s**u	1
Benedikt Ehinger	b**r@v**e	1
Kelvin Sarink	2****k	1
More, Shammi	s**e@f**e	1
Shammi270787	m**i@g**m	1
Stephan Heunis	j**s@g**m	1

Committer Domains (Top 20 + Academic)

fz-juelich.de: 4 waite.eu: 2 uni-muenster.de: 2 vis.uni-stuttgart.de: 1 stanford.edu: 1 orygen.org.au: 1 onerussian.com: 1 varonathe.org: 1 t-online.de: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time

Total issues: 79
Total pull requests: 65
Average time to close issues: about 2 months
Average time to close pull requests: 5 days
Total issue authors: 12
Total pull request authors: 9
Average comments per issue: 2.15
Average comments per pull request: 1.26
Merged pull requests: 57
Bot issues: 0
Bot pull requests: 1

Past Year

Issues: 11
Pull requests: 20
Average time to close issues: 15 days
Average time to close pull requests: 5 days
Issue authors: 5
Pull request authors: 3
Average comments per issue: 3.55
Average comments per pull request: 0.7
Merged pull requests: 16
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

mih (43)
adswa (12)
bpoldrack (10)
shoeffner (3)
behinger (3)
pdurbin (2)
RalfKunkel (1)
jsheunis (1)
loj (1)
bpinsard (1)
yarikoptic (1)
jernsting (1)

Pull Request Authors

mih (32)
adswa (25)
shoeffner (10)
christian-monch (8)
bpoldrack (6)
behinger (1)
allcontributors[bot] (1)
yarikoptic (1)
jsheunis (1)

Top Labels

Issue Labels

bug (5) enhancement (3) infra (2) documentation (1) no-coding (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- pypi 337 last-month

Total dependent packages: 0
Total dependent repositories: 1
Total versions: 4
Total maintainers: 2

pypi.org: datalad-dataverse

DataLad extension to deposit datasets on Dataverse

Homepage: https://github.com/datalad/datalad-dataverse
Documentation: https://datalad-dataverse.readthedocs.io/
License: MIT
Latest release: 1.0.3
published over 1 year ago

Versions: 4
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 337 Last month

Rankings

Dependent packages count: 7.3%

Forks count: 9.6%

Average: 14.5%

Downloads: 15.8%

Stargazers count: 17.7%

Dependent repos count: 22.1%

Maintainers (2)

Michael.Hanke adina

Last synced: 6 months ago

Dependencies

requirements-devel.txt pypi

sphinx *
sphinx_rtd_theme *

.github/workflows/docbuild.yml actions

actions/checkout v1 composite
actions/setup-python v1 composite

.github/workflows/add-changelog-snippet.yml actions

actions/checkout v3 composite
datalad/release-action/add-changelog-snippet v1 composite

.github/workflows/codespell.yml actions

actions/checkout v3 composite
codespell-project/actions-codespell v1 composite

_datalad_buildsupport/setup.py pypi

pyproject.toml pypi

setup.py pypi

datalad-dataverse

Science Score: 54.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

DataLad extension for working Dataverse

Installation

create and enter a new virtual environment (optional)

install from PyPi

How to use

Summary of functionality provided by this extension

Contributors ✨

Acknowledgements

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: datalad-dataverse

Rankings

Maintainers (2)

Dependencies