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stars-shiny-simmer

WORK IN PROGRESS: An example R shiny interface to a simmer DES model.

https://github.com/pythonhealthdatascience/stars-shiny-simmer

Science Score: 44.0%

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Repository

WORK IN PROGRESS: An example R shiny interface to a simmer DES model.

Basic Info
Statistics
  • Stars: 3
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 1
Created over 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog License Citation

README.html 














README






















































License: MIT Read the Docs ORCID: Harper ORCID: Monks ORCID: Heather ORCID: Mustafee




💫 Sharing Tools and Artifacts for Reproducible Simulations 2.0: a
template for a shiny interface to a simmer DES
model.




🏗 WORK IN PROGRESS (STARS 2.0) 🏗️

The materials in this repo are experimental.






Overview


The materials and methods in this documentation support work towards
developing the S.T.A.R.S healthcare framework
(Sharing Tools and
Artifacts for Reproducible
Simulations in healthcare). Long term S.T.A.R.S aims to
support researchers share open simulation models regardless of language
choice, improve the quality of sharing, and reduce the workload required
to meet high standards of open science for the modelling and simulation
community.




The code and written materials are a work in
progress towards STARS version 2.0. It is not recommended to
use these materials in simulation practice at the moment.




This repo demonstrates the application of sharing a discrete-event
simulation model in R and associated research artifacts:


    

  • All artifacts in this repository are linked to study researchers via
ORCIDs;
    • 

  • Model code is made available under the MIT license;
    • 

  • [To do: validate and test R dependencies managed
through renv]
    • 

  • The R code and simmer model are documented and explained in a quarto
website served up by GitHub pages;
    • 

  • [To do: the materials are deposited and made
citatable using Zenodo;]
    • 

  • [To do: The models are sharable with other
researchers and the NHS without the need to install software.]
    •

Owner

  • Name: pythonhealthdatascience
  • Login: pythonhealthdatascience
  • Kind: organization

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: >-
  Sharing Tools and Artefacts for Reproducible Simulations
  2.0: a template for a `shiny` interface to a `simmer` DES
  model
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Thomas
    family-names: Monks
    affiliation: University of Exeter
    orcid: 'https://orcid.org/0000-0003-2631-4481'
  - given-names: Alison
    family-names: Harper
    affiliation: University of Exeter
    orcid: 'https://orcid.org/0000-0001-5274-5037'
  - given-names: Amy
    family-names: Heather
    affiliation: University of Exeter
    orcid: 'https://orcid.org/0000-0002-6596-3479'
  - given-names: Navonil
    family-names: Mustafee
    affiliation: University of Exeter
    orcid: 'https://orcid.org/0000-0002-2204-8924'
repository-code: >-
  https://github.com/pythonhealthdatascience/stars-shiny-simmer
abstract: >

  The materials and methods in this model work towards
  developing the STARS healthcare framework  (Sharing Tools
  and Artifacts for Reproducible Simulations  in
  healthcare). The code and written materials are a work  in
  progress towards STARS version 2.0 (aiming to support 
  both R and Python).  The materials are not currently 
  production ready and are not recommended for use in
  simulation practice at this stage.
keywords:
  - Free and Open Source Software
  - Model Reuse
  - Discrete-event simulation
  - Open Science
  - Simmer
  - R
  - Shiny
license: MIT
references:
  - type: article
    title: Towards sharing tools and artefacts for reusable simulations in healthcare
    authors:
      - given-names: Thomas
        family-names: Monks
      - given-names: Alison
        family-names: Harper
      - given-names: Navonil
        family-names: Mustafee
    doi: 10.1080/17477778.2024.2347882
    journal: Journal of Simulation
    publisher:
      name: Taylor & Francis
    month: 5
    year: 2024
  - type: book
    title: Foundations and Methods of Stochastic Simulation
    authors:
      - given-names: Barry L.
        family-names: Nelson
    publisher:
      name: Springer New York
    year: 2013
    doi: 10.1007/978-1-4614-6160-9
    edition: 1st edition

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