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https://github.com/cgohlke/icsdll

Interface to the image correlation spectroscopy library ICSx64.dll.

https://github.com/cgohlke/icsdll

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
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    DOI references
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    Academic publication links
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    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
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  • ○
    Scientific vocabulary similarity
    Low similarity (11.9%) to scientific vocabulary

Keywords

correlation cplusplus fluorescence fluorescence-correlation fluorescence-fluctuations fluorescence-microscopy-imaging image-processing python spectroscopy
Last synced: 5 months ago · JSON representation

Repository

Interface to the image correlation spectroscopy library ICSx64.dll.

Basic Info
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
correlation cplusplus fluorescence fluorescence-correlation fluorescence-fluctuations fluorescence-microscopy-imaging image-processing python spectroscopy
Created almost 5 years ago · Last pushed 7 months ago
Metadata Files
Readme License

README.rst 

..
  This file is generated by setup.py

Interface to the image correlation spectroscopy library ICSx64.dll
==================================================================

ICSdll is a Python ctypes interface to the Image Correlation Spectroscopy
Dynamic Link Library (ICSx64.dll) developed at the Laboratory for Fluorescence
Dynamics (LFD) for the Globals for Images SimFCS software.

ICSx64.dll is implemented in C++ using the Intel(r) oneAPI Math Kernel Library
and OpenMP. It provides functions and classes for the analysis of fluorescence
time series data:

- 1D, 2D, and 3D auto- and cross-correlation
- Image pair correlation function (ipCF)
- Airy detector pair correlation function (apCF)
- Image mean square displacement (iMSD)
- Line spatio-temporal image correlation spectroscopy (lSTICS)
- Fit 1D pair correlation functions to the results of ipCF analysis
- Subtract immobile fractions
- Correct photo-bleaching
- 1D DFTs of image stack

:Author: `Christoph Gohlke `_
:License: BSD 3-Clause
:Version: 2025.8.8

Requirements
------------

This revision was tested with the following requirements and dependencies
(other versions may work):

- `CPython `_ 3.11.9, 3.12.10, 3.13.6 3.14.0rc 64-bit
- `Numpy `_ 2.3.2
- `Intel(r) oneAPI Math Kernel Library `_
  2025.2 (build)
- `Visual Studio 2022 C++ compiler `_
  (build)

Revisions
---------

2025.8.8

- Support Python 3.14.
- Rebuild package with oneAPI MKL 2025.2.

2025.1.6

- Support Python 3.13 and numpy 2.
- Rebuild package with oneAPI MKL 2025.0.

2024.1.6

- Rebuild package with oneAPI MKL 2024.0.0.

2023.1.6

- Rebuild package with oneAPI MKL 2022.2.1 and Visual Studio 2022.
- Update metadata.

2022.2.6

- Rebuild package with oneAPI 2022.

2021.3.2

- Rebuild package.

2019.11.22

- Wrap yxt_dft functions.
- Upgrade to ICSx64.DLL version 2019.11.22.

2019.7.10

- Pass 22 tests.
- Wrap apcf, imsd, and lstics functions.
- Raise IcsError in case of DLL function errors.
- Use ICSx64.DLL version 2019.7.10.

2019.5.22

- Initial release based on ICSx64.DLL version 2018.7.18.

Notes
-----

ICSdll was developed, built, and tested on 64-bit Windows only.

The API is not stable and might change between revisions.

Refer to the C++ header file and source code for function signatures.

References
----------

1. `ipcf.ipynb `_
   Pair correlation function analysis of fluorescence fluctuations in
   big image time series using Python.
2. `Globals for Images SimFCS `_,
   Software for fluorescence image acquisition, analysis, and simulation.
3. `Globals for Airyscan `_,
   Image correlation analysis for the ZEISS(tm) LSM 880 Airyscan detector.

Owner

  • Name: Christoph Gohlke
  • Login: cgohlke
  • Kind: user
  • Location: Irvine, California

GitHub Events

Total
  • Push event: 2
  • Create event: 1
Last Year
  • Push event: 2
  • Create event: 1

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 59
  • Total Committers: 2
  • Avg Commits per committer: 29.5
  • Development Distribution Score (DDS): 0.441
Past Year
  • Commits: 13
  • Committers: 1
  • Avg Commits per committer: 13.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Christoph Gohlke c****e@u****u 33
Christoph Gohlke c****e@c****m 26
Committer Domains (Top 20 + Academic)
cgohlke.com: 1 uci.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Packages

  • Total packages: 1
  • Total downloads:
    • pypi 126 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 1
  • Total versions: 7
  • Total maintainers: 1
pypi.org: icsdll

Interface to the image correlation spectroscopy library ICSx64.dll

  • Versions: 7
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 126 Last month
Rankings
Dependent packages count: 10.1%
Dependent repos count: 21.6%
Average: 25.2%
Forks count: 29.8%
Stargazers count: 31.9%
Downloads: 32.5%
Maintainers (1)
cgohlke
Last synced: 7 months ago

Dependencies

setup.py pypi
  • numpy >=1.19.5