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biobb_websites

https://github.com/bioexcel/biobb_websites

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.7%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: bioexcel
  • Default Branch: master
  • Size: 2.93 KB
Statistics
  • Stars: 0
  • Watchers: 8
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created about 4 years ago · Last pushed 12 months ago
Metadata Files
Readme Citation

README.md

biobb websites

Summary

This is the repositry for the BioExcel Building Blocks websites.

BioExcel Building Blocks REST API

In this site we provide programmatic access to the BioExcel Building Blocks packages via a REST API interface. Further information can be found in the Availability and Tutorials sections of the site.

BioExcel Building Blocks Workflows

In this site we provide the ability of running several workflows on top of the BioExcel Building Blocks packages.

Workflows can be run starting from a structure, a DNA sequence, a trajectory, a protein+ligand complex or a small molecule.

Copyright & Licensing

This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU Horizon Europe 101093290, EU H2020 823830, EU H2020 675728).

Licensed under the Apache License 2.0, see the file LICENSE for details.

Owner

  • Name: BioExcel
  • Login: bioexcel
  • Kind: organization

Center of Excellence for Computational Biomolecular Research

Citation (CITATION.cff) 

# YAML 1.2
---
abstract: BioExcel Building Blocks (BioBB) library. BioBB's are built as Python wrappers to provide an interoperable architecture. BioBB's have been integrated in a chain of usual software management tools to generate data ontologies, documentation, installation packages, software containers and ways of integration with workflow managers, that make them usable in most computational environments.
authors:
  - affiliation: Barcelona Supercomputing Center (BSC)
    family-names: Andrio
    given-names: Pau
    orcid: https://orcid.org/0000-0003-2116-3880
  - affiliation: Institute for Research in Biomedicine (IRB Barcelona)
    family-names: Hospital
    given-names: Adam
    orcid: https://orcid.org/0000-0002-8291-8071
  - affiliation: Institute for Research in Biomedicine (IRB Barcelona)
    family-names: Bayarri
    given-names: Genís
    orcid: https://orcid.org/0000-0003-0513-0288
  - affiliation: Institute for Research in Biomedicine (IRB Barcelona)
    family-names: García
    given-names: Agustín
    orcid: https://orcid.org/0009-0002-2159-965X
  - affiliation: Institute for Research in Biomedicine (IRB Barcelona), University
      of Barcelona (UB)
    family-names: Orozco
    given-names: Modesto
    orcid: https://orcid.org/0000-0002-8608-3278
  - affiliation: Barcelona Supercomputing Center (BSC), University of Barcelona (UB)
    family-names: Gelpí
    given-names: Josep Ll.
    orcid: https://orcid.org/0000-0002-0566-7723
    email: gelpi@ub.edu
cff-version: 1.2.0
date-released: 2019-09-10
keywords:
  - BioExcel
  - BioBB
  - Bioinformatics
  - Computational Biology
  - Biomolecular Workflows
license: Apache-2.0
message: If you use this dataset, please cite it using the metadata from this file.
repository-code: https://github.com/bioexcel/biobb
title: BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows
preferred-citation:
  type: article
  authors:
    - affiliation: Barcelona Supercomputing Center (BSC)
      family-names: Andrio
      given-names: Pau
      orcid: https://orcid.org/0000-0003-2116-3880
    - affiliation: Institute for Research in Biomedicine (IRB Barcelona)
      family-names: Hospital
      given-names: Adam
      orcid: https://orcid.org/0000-0002-8291-8071
    - affiliation: Barcelona Supercomputing Center (BSC)
      family-names: Conejero
      given-names: Javier
      orcid: https://orcid.org/0000-0001-6401-6229
    - affiliation: Barcelona Supercomputing Center (BSC)
      family-names: Jordà
      given-names: Luis
      orcid: https://orcid.org/0000-0002-9407-9703
    - affiliation: Barcelona Supercomputing Center (BSC)
      family-names: Del Pino
      given-names: Marc
      orcid: https://orcid.org/0000-0001-5565-7577
    - affiliation: Barcelona Supercomputing Center (BSC)
      family-names: Laia
      given-names: Codó
      orcid: https://orcid.org/0000-0002-6797-8746
    - affiliation: University of Manchester (UOM)
      family-names: Soiland-Reyes
      given-names: Stian
      orcid: https://orcid.org/0000-0001-9842-9718
    - affiliation: University of Manchester (UOM)
      family-names: Goble
      given-names: Carole
      orcid: https://orcid.org/0000-0003-1219-2137
    - affiliation: Barcelona Supercomputing Center (BSC)
      family-names: Lezzi
      given-names: Daniele
      orcid: https://orcid.org/0000-0001-5081-7244
    - affiliation: Barcelona Supercomputing Center (BSC)
      family-names: Badia
      given-names: Rosa M
      orcid: https://orcid.org/0000-0003-2941-5499
    - affiliation: Institute for Research in Biomedicine (IRB Barcelona), University
        of Barcelona (UB)
      family-names: Orozco
      given-names: Modesto
      orcid: https://orcid.org/0000-0002-8608-3278
    - affiliation: Barcelona Supercomputing Center (BSC), University of Barcelona (UB)
      family-names: Gelpí
      given-names: Josep Ll.
      orcid: https://orcid.org/0000-0002-0566-7723
      email: gelpi@ub.edu
  doi: 10.1038/s41597-019-0177-4
  journal: Nature Scientific Data
  month: 9
  start: 169
  title: BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows
  issue: 1
  volume: 6
  year: 2019

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Dependencies

.github/workflows/inactive_issues.yml actions
  • actions/stale v5 composite