plateypus
Processes and plots high throughput cytometry experiments through a GUI
Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
4 of 8 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.4%) to scientific vocabulary
Repository
Processes and plots high throughput cytometry experiments through a GUI
Basic Info
- Host: GitHub
- Owner: soorajachar
- License: gpl-3.0
- Language: Python
- Default Branch: main
- Size: 2.75 MB
Statistics
- Stars: 6
- Watchers: 1
- Forks: 2
- Open Issues: 2
- Releases: 2
Metadata Files
README.md
A GUI to process and plot high throughput bulk cytokine, surface marker, and single cell data exported from Flowjo
Main powerpoint tutorial for GUI is hosted on google drive:
https://drive.google.com/file/d/1jt8ZlOiArbiVK-RyF1_rrS8swEYsqWae/view?usp=sharing
To use this package:
1. If anaconda is not installed, follow installation instructions here: https://docs.anaconda.com/anaconda/install/
2. Start terminal, type in and enter:
conda activate
3. Now install plateypus via PyPi by typing the following line in the terminal:
pip install plateypus
4. In this anaconda environment, type:
python3 -m plateypus
to start the GUI
Owner
- Login: soorajachar
- Kind: user
- Repositories: 3
- Profile: https://github.com/soorajachar
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Achar
given-names: Sooraj
orcid: https://orcid.org/0000-0003-3425-7501
title: "plateypus"
version: 0.3.11
doi: 10.5281/zenodo.5749107
date-released: 2021-12-02
GitHub Events
Total
- Watch event: 1
- Push event: 2
Last Year
- Watch event: 1
- Push event: 2
Committers
Last synced: about 3 years ago
All Time
- Total Commits: 92
- Total Committers: 8
- Avg Commits per committer: 11.5
- Development Distribution Score (DDS): 0.63
Top Committers
| Name | Commits | |
|---|---|---|
| Achar | a****r@n****v | 34 |
| Achar | a****r@n****e | 32 |
| Madison Wahlsten | m****n@g****m | 8 |
| Achar | s****r@g****m | 7 |
| Achar | a****r@n****v | 5 |
| Wahlsten | m****l@u****u | 3 |
| Achar | a****r@n****m | 2 |
| Achar | a****r@n****v | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 10
- Total pull requests: 8
- Average time to close issues: 2 days
- Average time to close pull requests: 4 days
- Total issue authors: 3
- Total pull request authors: 1
- Average comments per issue: 1.7
- Average comments per pull request: 0.13
- Merged pull requests: 6
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- emanuelsc87 (6)
- Immunodynamics (2)
- madisonwahlsten (1)
Pull Request Authors
- madisonwahlsten (8)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 348 last-month
- Total dependent packages: 1
- Total dependent repositories: 1
- Total versions: 63
- Total maintainers: 1
pypi.org: plateypus
Processes and plots high throughput cytometry experiments through a GUI
- Homepage: https://github.com/soorajachar/plateypus
- Documentation: https://plateypus.readthedocs.io/
- License: GNU General Public License v3 (GPLv3)
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Latest release: 0.6.11
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- importlib_metadata *
- openpyxl *
- pandas *
- pillow *
- scipy *
- seaborn *
- tables *