data-registry

The FAIR Data Registry is a Django website and REST API which is used by the FAIR Data Pipeline to store metadata about code runs and their inputs and outputs

https://github.com/fairdatapipeline/data-registry

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 3 DOI reference(s) in README
  • Academic publication links
    Links to: zenodo.org
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (11.6%) to scientific vocabulary
Last synced: 9 months ago · JSON representation ·

Repository

The FAIR Data Registry is a Django website and REST API which is used by the FAIR Data Pipeline to store metadata about code runs and their inputs and outputs

Basic Info
  • Host: GitHub
  • Owner: FAIRDataPipeline
  • License: bsd-2-clause
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 1.12 MB
Statistics
  • Stars: 0
  • Watchers: 7
  • Forks: 1
  • Open Issues: 30
  • Releases: 30
Created about 6 years ago · Last pushed about 1 year ago
Metadata Files
Readme License Citation Codemeta

README.md

FAIR Data Registry

FAIR Data Registry codecovDOI

The FAIR data registry is a component of the FAIR data pipeline that maintains a metadata catalogue for different data types utilised and generated within a typical epidemiological modelling workflow.

Implementation

The FAIR data registry is implemented as a Django web application and REST API. The FAIR data pipeline uses the data registry to store metadata about code runs and their inputs and outputs.

Documentation

Information on how to install and run a local FAIR data registry is available at the local registry section in the project website.

The installation documentation covers the scripts provided to install in different platforms, how to install a particular branch of the repository.

Installation, development and maintenance guides, especially for the remote registry, are available in the Wiki. User documentation for the remote registry is also available here.

Owner

  • Name: FAIR Data Pipeline
  • Login: FAIRDataPipeline
  • Kind: organization

Citation (CITATION.cff)

abstract: "The FAIR data registry is a Django website and REST API which is used by the data-pipeline to store metadata about code runs and their inputs and outputs."
authors:
  - family-names: Blackwell
    given-names: Richard
  - family-names: Brett
    given-names: Alys
  - family-names: Cook
    given-names: James
  - family-names: Cummings
    given-names: Nathan
  - family-names: Field
    given-names: Ryan
    orcid: "http://orcid.org/0000-0002-4424-9890"
  - family-names: "Gonzalez-Beltran"
    given-names: Alejandra
    orcid: "http://orcid.org/0000-0003-3499-8262"
  - family-names: Hollocombe
    given-names: Jonathan
  - family-names: Lahiff
    given-names: Andrew
  - family-names: Richard
    given-names: Reeve
  - family-names: Wilson
    given-names: Antony
    orcid: "https://orcid.org/0000-0001-7336-4823"
  - family-names: Zarębski
    given-names: Kristian
cff-version: 1.2.0
license: "BSD-2-Clause"
message: "If you use this software, please cite it using these metadata."
repository-code: "https://github.com/FAIRDataPipeline/data-registry/"
title: "The FAIR Data Registry"
version: "v1.2.0"
doi: "10.5281/zenodo.5562750"
date-released: "2023-02-03"

CodeMeta (codemeta.json)

{
  "@context": "https://w3id.org/codemeta/3.0",
  "type": "SoftwareSourceCode",
  "applicationCategory": "Software",
  "author": [
    {
      "id": "_:author_1",
      "type": "Person",
      "familyName": "Blackwell",
      "givenName": "Richard"
    },
    {
      "id": "_:author_2",
      "type": "Person",
      "familyName": "Brett",
      "givenName": "Alys"
    },
    {
      "id": "_:author_3",
      "type": "Person",
      "familyName": "Cook",
      "givenName": "James"
    },
    {
      "id": "_:author_4",
      "type": "Person",
      "familyName": "Cumming",
      "givenName": "Nathan"
    },
    {
      "id": "http://orcid.org/0000-0002-4424-9890",
      "type": "Person",
      "affiliation": {
        "type": "Organization",
        "name": "University of Glasgow"
      },
      "familyName": "Field",
      "givenName": "Ryan"
    },
    {
      "id": "http://orcid.org/0000-0003-3499-8262",
      "type": "Person",
      "familyName": "Gonzalez-Beltran",
      "givenName": "Alejandra"
    },
    {
      "id": "_:author_7",
      "type": "Person",
      "familyName": "Hollocombe",
      "givenName": "Jonathan"
    },
    {
      "id": "_:author_8",
      "type": "Person",
      "familyName": "Lahiff",
      "givenName": "Andrew"
    },
    {
      "id": "_:author_9",
      "type": "Person",
      "affiliation": {
        "type": "Organization",
        "name": "University of Glasgow"
      },
      "familyName": "Reeve",
      "givenName": "Richard"
    },
    {
      "id": "_:author_10",
      "type": "Person",
      "familyName": "Wilson",
      "givenName": "Anthony"
    },
    {
      "id": "_:author_11",
      "type": "Person",
      "familyName": "Zarebski",
      "givenName": "Kristian"
    }
  ],
  "codeRepository": "git+https://github.com/FAIRDataPipeline/data-registry.git",
  "dateCreated": "2020-05-07",
  "dateModified": "2024-02-23",
  "datePublished": "2021-06-22",
  "description": "The FAIR data registry is a component of the FAIR data pipeline that maintains a metadata catalogue for different data types utilised and generated within a typical epidemiological modelling workflow.",
  "downloadUrl": "https://github.com/FAIRDataPipeline/data-registry/archive/refs/tags/v1.2.1.tar.gz",
  "identifier": "10.5281/zenodo.5562749",
  "isPartOf": "https://www.fairdatapipeline.org",
  "keywords": [
    "FAIR",
    "REST",
    "Django",
    "Data Pipeline"
  ],
  "license": "https://spdx.org/licenses/GPL-3.0+",
  "name": "FAIR Data Registry",
  "operatingSystem": [
    "Linux",
    "Windows",
    "MacOS"
  ],
  "programmingLanguage": "Python 3",
  "releaseNotes": "Full Changelog: https://github.com/FAIRDataPipeline/data-registry/compare/v1.1.0...v1.2.1",
  "softwareRequirements": "Django",
  "version": "1.2.1",
  "codemeta:contIntegration": {
    "id": "https://github.com/FAIRDataPipeline/data-registry/actions"
  },
  "continuousIntegration": "https://github.com/FAIRDataPipeline/data-registry/actions",
  "developmentStatus": "active",
  "issueTracker": "https://github.com/FAIRDataPipeline/data-registry/issues"
}

GitHub Events

Total
  • Release event: 2
  • Delete event: 7
  • Issue comment event: 16
  • Push event: 12
  • Pull request event: 17
  • Create event: 13
Last Year
  • Release event: 2
  • Delete event: 7
  • Issue comment event: 16
  • Push event: 12
  • Pull request event: 17
  • Create event: 13

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 76
  • Total pull requests: 125
  • Average time to close issues: about 2 months
  • Average time to close pull requests: about 2 months
  • Total issue authors: 12
  • Total pull request authors: 13
  • Average comments per issue: 3.96
  • Average comments per pull request: 2.14
  • Merged pull requests: 97
  • Bot issues: 0
  • Bot pull requests: 38
Past Year
  • Issues: 0
  • Pull requests: 11
  • Average time to close issues: N/A
  • Average time to close pull requests: 17 days
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.91
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 8
Top Authors
Issue Authors
  • alahiff (18)
  • agbeltran (16)
  • richardreeve (9)
  • soniamitchell (9)
  • ghost (8)
  • alysbrett (5)
  • RyanJField (4)
  • bobturneruk (3)
  • claireh93 (1)
  • antony-wilson (1)
  • mjb3 (1)
  • jholloc (1)
Pull Request Authors
  • dependabot[bot] (53)
  • RyanJField (37)
  • alahiff (23)
  • antony-wilson (11)
  • ghost (8)
  • agbeltran (6)
  • jwscook (4)
  • jholloc (3)
  • rtblackwell (2)
  • kzscisoft (1)
  • bobturneruk (1)
  • richardreeve (1)
  • bruvio (1)
Top Labels
Issue Labels
schema changes (12) question (1) on hold (1)
Pull Request Labels
dependencies (53) python (3)

Dependencies

local-requirements.txt pypi
  • Django ==3.1.13
  • Markdown ==3.2.2
  • certifi ==2020.4.5.1
  • chardet ==3.0.4
  • coverage *
  • coverage ==5.5
  • decorator ==4.4.2
  • defusedxml ==0.6.0
  • django-allauth ==0.42.0
  • django-bootstrap-breadcrumbs ==0.9.2
  • django-crispy-forms ==1.9.2
  • django-dynamic-model-validation ==0.1.13
  • django-extensions ==2.2.9
  • django-filter ==2.3.0
  • django-grappelli ==2.14.2
  • djangorestframework ==3.11.2
  • future ==0.17.1
  • gunicorn ==20.0.4
  • idna ==2.9
  • isodate ==0.6.0
  • lxml ==4.8.0
  • mysql-connector-python ==8.0.20
  • networkx ==2.4
  • oauthlib ==3.1.0
  • protobuf ==3.12.2
  • prov ==1.5.3
  • pydot ==1.4.1
  • pyparsing ==2.4.7
  • python-dateutil ==2.8.1
  • python3-openid ==3.1.0
  • pytz ==2020.1
  • rdflib ==6.0.1
  • requests ==2.25.0
  • requests-oauthlib ==1.3.0
  • semver ==2.10.2
  • setuptools *
  • six ==1.14.0
  • sqlparse ==0.3.1
  • urllib3 ==1.26.5
  • whitenoise ==5.2.0
poetry.lock pypi
  • asgiref 3.5.0
  • certifi 2021.10.8
  • charset-normalizer 2.0.12
  • coverage 5.5
  • decorator 5.1.1
  • defusedxml 0.7.1
  • django 3.1.13
  • django-allauth 0.42.0
  • django-bootstrap-breadcrumbs 0.9.2
  • django-crispy-forms 1.9.2
  • django-dynamic-model-validation 0.1.13
  • django-extensions 2.2.9
  • django-filter 2.3.0
  • django-grappelli 2.14.2
  • djangorestframework 3.11.2
  • future 0.17.1
  • gunicorn 20.0.4
  • idna 3.3
  • importlib-metadata 4.11.3
  • isodate 0.6.1
  • lxml 4.8.0
  • markdown 3.2.2
  • mysql-connector-python 8.0.20
  • networkx 2.4
  • oauthlib 3.2.0
  • protobuf 3.19.4
  • prov 1.5.3
  • pydot 1.4.1
  • pyparsing 3.0.7
  • python-dateutil 2.8.2
  • python3-openid 3.2.0
  • pytz 2021.3
  • rdflib 6.1.1
  • requests 2.27.1
  • requests-oauthlib 1.3.1
  • semver 2.10.2
  • six 1.14.0
  • sqlparse 0.4.2
  • typing-extensions 4.1.1
  • urllib3 1.26.9
  • whitenoise 5.2.0
  • zipp 3.7.0
pyproject.toml pypi
  • Django 3.1.13
  • Markdown 3.2.2
  • coverage 5.5
  • django-allauth 0.42.0
  • django-bootstrap-breadcrumbs 0.9.2
  • django-crispy-forms 1.9.2
  • django-dynamic-model-validation 0.1.13
  • django-extensions 2.2.9
  • django-filter 2.3.0
  • django-grappelli 2.14.2
  • djangorestframework 3.11.2
  • future 0.17.1
  • gunicorn 20.0.4
  • mysql-connector-python 8.0.20
  • networkx 2.4
  • prov 1.5.3
  • pydot 1.4.1
  • python >=3.7.1, <3.11
  • semver 2.10.2
  • whitenoise 5.2.0
requirements.txt pypi
  • Django ==3.1.13
  • Markdown ==3.2.2
  • coverage ==5.5
  • django-allauth ==0.42.0
  • django-bootstrap-breadcrumbs ==0.9.2
  • django-crispy-forms ==1.9.2
  • django-dynamic-model-validation ==0.1.13
  • django-extensions ==2.2.9
  • django-filter ==2.3.0
  • django-grappelli ==2.14.2
  • djangorestframework ==3.11.2
  • future ==0.17.1
  • gunicorn ==20.0.4
  • mysql-connector-python ==8.0.20
  • networkx ==2.4
  • prov ==1.5.3
  • pydot ==1.4.1
  • semver ==2.10.2
  • whitenoise ==5.2.0
tools/setup.py pypi
  • h5py *
  • requests *
  • toml *
.github/workflows/fair-data-registry.yaml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • codecov/codecov-action v2 composite
  • snok/install-poetry v1 composite