https://github.com/chalk-lab/mcmctempering.jl - v0.3.2

MCMCTempering v0.3.2

Diff since v0.3.1

Closed issues: - Leverage existing ways in TuringLang (if they exist) / Julia ecosystem to approximate K in the case of Simulated Tempering (#3) - Is there any reason to return all of the PT chains, or should only the one where beta = 1 be returned in all cases? (#20) - Solve the problem of sampler specific types obscuring access to the VarInfo (#63) - Figure out a consistent way to return swap history and other chains if desired (#123) - Extend the suite of tests to match level of coverage in Turing (#124) - Support multiple samplers (#148) - Support passing a chain type and returning in line with it from tempered_sample (#149)

Merged pull requests: - Renaming of some fields (#142) (@torfjelde) - Implementing and correcting the base set of swap strategies, plus wrapping swap moves as part of steps (#143) (@HarrisonWilde) - Introduction of compositions and products of samplers and models (#151) (@torfjelde) - Introduction of SwapSampler + make TemperedSampler a fancy version of CompositionSampler (#152) (@torfjelde) - Documentation (#153) (@torfjelde) - Use process_to_chain in roundtrips instead (#154) (@torfjelde) - Improvements to state_from and more extensive docs (#155) (@torfjelde)

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/chalk-lab/mcmctempering.jl - v0.3.1

MCMCTempering v0.3.1

Diff since v0.3.0

Merged pull requests: - Fixed significant bugs (#141) (@torfjelde)

- Julia
Published by github-actions[bot] about 3 years ago

https://github.com/chalk-lab/mcmctempering.jl - v0.3.0

MCMCTempering v0.3.0

Diff since v0.2.0

Merged pull requests: - Support for LogDensityProblems.jl (#139) (@torfjelde)

- Julia
Published by github-actions[bot] about 3 years ago

https://github.com/chalk-lab/mcmctempering.jl - v0.2.0

MCMCTempering v0.2.0

Diff since v0.1.1

Closed issues: - Implement online adaptation of the temperature schedule (#69) - Add Disclaimer in README that this repo is non-functional (#135)

Merged pull requests: - Quality of life improvements to docs and code (#129) (@HarrisonWilde) - Implemented adaptation per Miasojedow 2013 (#131) (@HarrisonWilde) - Adding missed change (#132) (@HarrisonWilde) - General improvements and fixes (#133) (@torfjelde) - add warning about package status (#136) (@itsdfish) - Added a tempered_sample helper function and no-swap burn-in functionality (#137) (@HarrisonWilde) - CompatHelper: add new compat entry for ProgressLogging at version 0.1, (keep existing compat) (#138) (@github-actions[bot])

- Julia
Published by github-actions[bot] about 3 years ago

https://github.com/chalk-lab/mcmctempering.jl - v0.1.1

MCMCTempering v0.1.1

Diff since v0.1.0

Closed issues: - Register the package (#97) - Remove unicode characters from the API function names (#127)

Merged pull requests: - Change api function names (#128) (@HarrisonWilde)

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/chalk-lab/mcmctempering.jl - v0.1.0

MCMCTempering v0.1.0

Closed issues: - Package name discussions (#1) - How best to generalise the swap_acceptance_x functions for each algorithm (#2) - Should I be worried about Base.Docs warnings when pre-compiling a package for the first time (#4) - How best to build the tempered model for a step of the tempered algorithms (#5) - Create temperature schedule plot templates to aid debugging (#6) - Best way to parallelise parallel tempering (#7) - Reconstruct chains correctly from parallel tempering (#19) - Implement Non-Rev Rev sampling strategy for PT (#21) - index temperature by integer (#25) - Avoid evaluating the same logdensity twice (#42) - Propagate the Selector through the DynamicPPL.Samplers in order to use the Sampler to index the VI and return Theta per step (#58) - Store the swap history (#59) - Plot swap history helper function (#61) - Enable parallelism (#64) - Create a minimal function-based API for greater general applicability of this package (#68)

Merged pull requests: - Selector and store swap history (#60) (@HarrisonWilde) - Closes #61 (#62) (@HarrisonWilde) - Closes #64 enabling MCMCThreads style parallelism across chains (#65) (@HarrisonWilde) - Working general API for usage with Turing, AHMC etc. (#122) (@HarrisonWilde)

- Julia
Published by github-actions[bot] over 4 years ago