Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.9%) to scientific vocabulary
Keywords
Repository
Generic CWL tool job executor for VRE
Basic Info
- Host: GitHub
- Owner: inab
- License: apache-2.0
- Language: Python
- Default Branch: master
- Homepage: https://github.com/inab/openVRE
- Size: 4.04 MB
Statistics
- Stars: 0
- Watchers: 9
- Forks: 0
- Open Issues: 4
- Releases: 2
Topics
Metadata Files
README.md
VRE CWL Tool Executor
Requirements
- Python 3.6 or later
- git
- singularity
bash
sudo apt update
sudo apt install python3
sudo apt install git
In order to install the Python dependencies you need pip and venv modules.
bash
sudo apt install python3-pip python3-venv
Installation
Directly from GitHub:
bash
cd $HOME
git clone https://github.com/inab/vre_cwl_executor.git
cd vre_cwl_executor
Create the Python environment:
bash
python3 -m venv venv
source venv/bin/activate
pip install --upgrade pip wheel
pip install -r requirements.txt
Run the Wrapper
bash
./VRE_RUNNER --config tests/basic/config.json --in_metadata tests/basic/in_metadata.json --out_metadata out_metadata.json --log_file VRE_RUNNER.log
License
- © 2020-2022 Barcelona Supercomputing Center (BSC), ES
Licensed under the Apache License Version 2.0, see the file LICENSE for details.
Owner
- Name: Spanish National Bioinformatics Institute
- Login: inab
- Kind: organization
- Email: salvador.capella@bsc.es
- Location: Spain
- Website: https://inb-elixir.es
- Repositories: 172
- Profile: https://github.com/inab
Alfonso Valencia | BSC, ICREA, INB Director - Salvador Capella-Gutierrez | BSC, INB CTO
Citation (CITATION.cff)
authors:
- family-names: Rodríguez-Navas
given-names: Laura
orcid: "https://orcid.org/0000-0003-4929-1219"
cff-version: 1.2.0
date-released: "2020-01-03"
keywords:
- wrapper
- tool
- vre
- cwltool
- cwl-workflows
- ro-crate
license: Apache-2.0
message: "If you use this software, please cite it using these metadata."
repository-code: "https://github.com/inab/vre_cwl_executor"
type: software
title: "VRE CWL Tool Executor"
version: 0.1.1
GitHub Events
Total
Last Year
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| lrodrin | l****n@g****m | 219 |
| lrodrin | l****z@b****s | 92 |
| José María Fernández | j****z@b****s | 3 |
| Michael R. Crusoe | m****e@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 6
- Total pull requests: 4
- Average time to close issues: 7 days
- Average time to close pull requests: 15 days
- Total issue authors: 2
- Total pull request authors: 2
- Average comments per issue: 1.67
- Average comments per pull request: 0.5
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lrodrin (4)
- AsierGonzalez (2)
Pull Request Authors
- mr-c (1)
- lrodrin (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- cwltool *
- openvre-tool-api v0.5.6
- rocrate master
- ruamel.yaml *