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Open Source Science

https://github.com/chaoss/augur-utilities

Utilities for working with Augur data

https://github.com/chaoss/augur-utilities

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.9%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Utilities for working with Augur data

Basic Info
  • Host: GitHub
  • Owner: chaoss
  • License: mit
  • Language: HTML
  • Default Branch: main
  • Size: 141 MB
Statistics
  • Stars: 1
  • Watchers: 5
  • Forks: 2
  • Open Issues: 4
  • Releases: 10
Created over 1 year ago · Last pushed 12 months ago
Metadata Files
Readme License

README.md

augur-utilities image

Utilities for working with Augur data. 1. Tod Do Group Repo Linter (at scale) 2. Augur Data Collection Evaluation Queries 3. Cleaning up Duplicate Repositories (Legacy Augur Instance Repair)+ 4. Hash Encryption of Email 5. Clone a Bunch of Repos 6. Augur DBA Tools 7. Augur Datamart and Network Analysis Table Creation 8. Augur Scanner with Scancode 9. Augur System Administrator🐠 10. Augur Testing🙀

Use the issues tab in this repo if there's a utility you would like to see.

+ This script is only necessary on instances of Augur that began collecting data before May, 2024. That does not mean it's required, however it does mean that new instances will not have to worry about this at all. Duplicate repos were only introduced in very specific circumstances where GitHub org addition and repo movement to new URL's were not addressed in concert.

🐠 - Augur system administrator addresses maintenance and trouble shooting around the distributed components that make up an operational and growing Augur instance. RabbitMQ, Redis/Valkey and Postgresql troubleshooting are included.

🙀 - Augur testing provides simple scripts for evaluating the non-deterministic aspects of Augur, which include its principle aim of collecting open source software health and sustainability data.

Owner

  • Name: CHAOSS
  • Login: chaoss
  • Kind: organization

GitHub Events

Total
  • Create event: 18
  • Issues event: 1
  • Release event: 9
  • Watch event: 1
  • Delete event: 7
  • Issue comment event: 1
  • Push event: 274
  • Pull request review event: 2
  • Pull request review comment event: 1
  • Pull request event: 17
  • Fork event: 2
Last Year
  • Create event: 18
  • Issues event: 1
  • Release event: 9
  • Watch event: 1
  • Delete event: 7
  • Issue comment event: 1
  • Push event: 274
  • Pull request review event: 2
  • Pull request review comment event: 1
  • Pull request event: 17
  • Fork event: 2

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 241
  • Total Committers: 1
  • Avg Commits per committer: 241.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 241
  • Committers: 1
  • Avg Commits per committer: 241.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Sean P. Goggins s@g****m 241
Committer Domains (Top 20 + Academic)
goggins.com: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 14
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 minute
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 14
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 minute
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • MoralCode (1)
Pull Request Authors
  • sgoggins (13)
  • MoralCode (2)
Top Labels
Issue Labels
Pull Request Labels
release (4) bug (2)

Dependencies

more_cowbell/requirements.txt pypi
  • ace_tools ==0.0
  • certifi ==2025.1.31
  • charset-normalizer ==3.4.1
  • idna ==3.10
  • numpy ==2.2.3
  • pandas ==2.2.3
  • psycopg2-binary ==2.9.10
  • python-dateutil ==2.9.0.post0
  • pytz ==2025.1
  • requests ==2.32.3
  • six ==1.17.0
  • tzdata ==2025.1
  • urllib3 ==2.3.0
augur_monitor/requirements.txt pypi
  • Jinja2 ==3.1.6
  • MarkupSafe ==3.0.2
  • PySocks ==1.7.1
  • PyYAML ==6.0.2
  • attrs ==25.3.0
  • bokeh ==3.7.2
  • certifi ==2025.1.31
  • chardet ==5.2.0
  • contourpy ==1.3.2
  • h11 ==0.14.0
  • idna ==3.10
  • narwhals ==1.35.0
  • numpy ==2.2.4
  • outcome ==1.3.0.post0
  • packaging ==24.2
  • pandas ==2.2.3
  • pillow ==11.2.1
  • psycopg2-binary ==2.9.10
  • python-dateutil ==2.9.0.post0
  • pytz ==2025.2
  • reportlab ==4.4.0
  • selenium ==4.31.0
  • six ==1.17.0
  • sniffio ==1.3.1
  • sortedcontainers ==2.4.0
  • tornado ==6.4.2
  • trio ==0.29.0
  • trio-websocket ==0.12.2
  • typing_extensions ==4.13.2
  • tzdata ==2025.2
  • urllib3 ==2.4.0
  • websocket-client ==1.8.0
  • wsproto ==1.2.0
  • xyzservices ==2025.1.0
augur_scancode/requirements.txt pypi
  • Jinja2 ==3.1.6
  • MarkupSafe ==3.0.2
  • PyYAML ==6.0.2
  • Pygments ==2.19.1
  • attrs ==25.3.0
  • banal ==1.0.6
  • beautifulsoup4 ==4.13.4
  • binaryornot ==0.4.4
  • boolean.py ==5.0
  • certifi ==2025.1.31
  • cffi ==1.17.1
  • chardet ==5.2.0
  • charset-normalizer ==3.4.1
  • click ==8.1.8
  • colorama ==0.4.6
  • commoncode ==32.2.1
  • container-inspector ==33.0.0
  • cryptography ==44.0.2
  • debian_inspector ==31.1.0
  • dockerfile-parse ==2.0.1
  • dparse2 ==0.7.0
  • fasteners ==0.19
  • fingerprints ==1.2.3
  • ftfy ==6.3.1
  • gemfileparser2 ==0.9.4
  • html5lib ==1.1
  • idna ==3.10
  • importlib_metadata ==8.6.1
  • intbitset ==4.0.0
  • jaraco.functools ==4.1.0
  • javaproperties ==0.8.2
  • jsonstreams ==0.6.0
  • libmagic ==1.0
  • license-expression ==30.4.1
  • lxml ==5.3.2
  • more-itertools ==10.6.0
  • normality ==2.6.1
  • packageurl-python ==0.16.0
  • packaging ==24.2
  • packvers ==21.5
  • parameter-expansion-patched ==0.3.1
  • pdfminer.six ==20250416
  • pefile ==2024.8.26
  • pip-requirements-parser ==32.0.1
  • pkginfo2 ==30.0.0
  • pluggy ==1.5.0
  • plugincode ==32.0.0
  • ply ==3.11
  • psycopg2-binary ==2.9.10
  • publicsuffix2 ==2.20191221
  • pyahocorasick ==2.1.0
  • pycparser ==2.22
  • pygmars ==0.9.0
  • pymaven-patch ==0.3.2
  • pyparsing ==3.2.3
  • rdflib ==7.1.4
  • requests ==2.32.3
  • saneyaml ==0.6.1
  • scancode-toolkit ==32.0.2
  • six ==1.17.0
  • soupsieve ==2.6
  • spdx-tools ==0.7.0rc0
  • text-unidecode ==1.3
  • toml ==0.10.2
  • typecode ==30.0.2
  • typing_extensions ==4.13.2
  • urllib3 ==2.4.0
  • urlpy ==0.5
  • wcwidth ==0.2.13
  • webencodings ==0.5.1
  • xmltodict ==0.14.2
  • zipp ==3.21.0