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simpleitkutilities

A collection of utilities and integration tools to enhance SimpleITK in Python.

https://github.com/simpleitk/simpleitkutilities

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 4 committers (75.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.3%) to scientific vocabulary

Keywords from Contributors

mesh sequences interactive hacking
Last synced: 7 months ago · JSON representation ·

Repository

A collection of utilities and integration tools to enhance SimpleITK in Python.

Basic Info
  • Host: GitHub
  • Owner: SimpleITK
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Size: 108 KB
Statistics
  • Stars: 7
  • Watchers: 5
  • Forks: 4
  • Open Issues: 9
  • Releases: 5
Created about 3 years ago · Last pushed 7 months ago
Metadata Files
Readme License Citation Zenodo

README.md

SimpleITKUtilities

SimpleITK Utilities Testing  SimpleITK Utilities Website

This Python package provides a collection of utilities and integration tools which enhance the basic SimpleITK Python package functionality. It enables data exchange between SimpleITK and other packages (e.g. vtk, dask, PySide). Additional useful capabilities include handling SimpleITK messages using standard Python logging, making an image isotropic, a decorator which enables running a filter in a slice-by-slice manner and more.

For a complete list of utilities, see the package website.

Installation

The Python module is distributed on PyPI - The Python Package Index. The package can be installed by running: python -m pip install SimpleITKUtilities

Owner

  • Name: SimpleITK
  • Login: SimpleITK
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
title: "SimpleITK Utilities"
message: "If you find this software useful in your work, support our efforts by citing it using the following information."
type: software
authors:
  - family-names: Lowekamp
    given-names: Bradley C.
    orcid: 'https://orcid.org/0000-0002-4579-5738'
  - family-names: Chen
    given-names: David T.
    orcid: 'https://orcid.org/0009-0002-8386-7840'
  - family-names: Yaniv
    given-names: Ziv
    orcid: 'https://orcid.org/0000-0003-0315-7727'
url: 'https://github.com/SimpleITK/SimpleITKUtilities'

GitHub Events

Total
  • Watch event: 2
  • Delete event: 4
  • Issue comment event: 1
  • Push event: 4
  • Pull request review event: 4
  • Pull request event: 9
  • Fork event: 1
  • Create event: 6
Last Year
  • Watch event: 2
  • Delete event: 4
  • Issue comment event: 1
  • Push event: 4
  • Pull request review event: 4
  • Pull request event: 9
  • Fork event: 1
  • Create event: 6

Committers

Last synced: 12 months ago

All Time
  • Total Commits: 64
  • Total Committers: 4
  • Avg Commits per committer: 16.0
  • Development Distribution Score (DDS): 0.469
Past Year
  • Commits: 7
  • Committers: 1
  • Avg Commits per committer: 7.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Bradley Lowekamp b****p@m****v 34
Ziv Yaniv z****v@n****v 13
dependabot[bot] 4****] 10
Dave Chen d****n@m****v 7
Committer Domains (Top 20 + Academic)
mail.nih.gov: 2 nih.gov: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 9
  • Total pull requests: 49
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 12 days
  • Total issue authors: 2
  • Total pull request authors: 4
  • Average comments per issue: 0.56
  • Average comments per pull request: 0.43
  • Merged pull requests: 40
  • Bot issues: 0
  • Bot pull requests: 14
Past Year
  • Issues: 0
  • Pull requests: 12
  • Average time to close issues: N/A
  • Average time to close pull requests: 7 days
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.08
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 10
View more stats
Top Authors
Issue Authors
  • zivy (8)
  • dave3d (1)
Pull Request Authors
  • blowekamp (24)
  • dependabot[bot] (24)
  • zivy (14)
  • dave3d (3)
Top Labels
Issue Labels
Pull Request Labels
dependencies (24) github_actions (1)

Dependencies

.github/workflows/docs.yml actions
  • actions/checkout v3 composite
  • actions/configure-pages v3 composite
  • actions/deploy-pages v1 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
  • actions/upload-pages-artifact v1 composite
.github/workflows/main.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
.github/workflows/publish.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • pypa/gh-action-pypi-publish 0bf742be3ebe032c25dd15117957dc15d0cfc38d composite
docs/requirements.txt pypi
  • sphinx *
requirements.txt pypi
  • SimpleITK >=2.0
  • numpy *
test/requirements.txt pypi
  • pytest * test
pyproject.toml pypi