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biospheremetrics

This repository contains code for an R package to analyze outputs

https://github.com/stenzelf/biospheremetrics

Science Score: 44.0%

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    CITATION.cff file
    Found CITATION.cff file
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    Scientific vocabulary similarity
    Low similarity (14.7%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

This repository contains code for an R package to analyze outputs

Basic Info
  • Host: GitHub
  • Owner: stenzelf
  • License: agpl-3.0
  • Language: R
  • Default Branch: main
  • Size: 8.47 MB
Statistics
  • Stars: 2
  • Watchers: 1
  • Forks: 1
  • Open Issues: 10
  • Releases: 3
Created over 3 years ago · Last pushed 8 months ago
Metadata Files
Readme License Citation

README.md

logo Biosphere integrity metrics for LPJmL

R package biospheremetrics, version 1.1.0

CRAN status R build status codecov r-universe

Purpose and Functionality

Functions to compute Biosphere integrity metrics BioCol and EcoRisk based on output from LPJmL. inst/README.md

Installation

For installation of the most recent package version an additional repository has to be added in R:

r options(repos = c(CRAN = "@CRAN@", pik = "https://rse.pik-potsdam.de/r/packages")) The additional repository can be made available permanently by adding the line above to a file called .Rprofile stored in the home folder of your system (Sys.glob("~") in R returns the home directory).

After that the most recent version of the package can be installed using install.packages:

r install.packages("biospheremetrics")

Package updates can be installed using update.packages (make sure that the additional repository has been added before running that command):

r update.packages()

Tutorial

The package comes with a vignette describing the basic functionality of the package and how to use it. You can load it with the following command (the package needs to be installed):

r vignette("biospheremetrics") # Computing biospheremetrics

Questions / Problems

In case of questions / problems please contact Fabian Stenzel stenzel@pik-potsdam.de.

Citation

To cite package biospheremetrics in publications use:

Stenzel F, Breier J, Braun J (2025). "biospheremetrics: Biosphere integrity metrics for LPJmL." Version: 1.1.0, https://github.com/stenzelf/biospheremetrics.

A BibTeX entry for LaTeX users is

latex @Misc{, title = {biospheremetrics: Biosphere integrity metrics for LPJmL}, author = {Fabian Stenzel and Jannes Breier and Johanna Braun}, date = {2025-05-20}, year = {2025}, url = {https://github.com/stenzelf/biospheremetrics}, note = {Version: 1.1.0}, }

Owner

  • Name: Fabian Stenzel
  • Login: stenzelf
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
message: If you use this software, please cite it using the metadata from this file.
type: software
title: 'biospheremetrics: Biosphere integrity metrics for LPJmL'
version: 1.1.0
date-released: '2025-05-20'
abstract: Functions to compute Biosphere integrity metrics BioCol and EcoRisk based
  on output from LPJmL.
authors:
- family-names: Stenzel
  given-names: Fabian
  email: stenzel@pik-potsdam.de
  orcid: https://orcid.org/0000-0002-5109-0048
- family-names: Breier
  given-names: Jannes
  email: jannesbr@pik-potsdam.de
  orcid: https://orcid.org/0000-0002-9055-6904
- family-names: Braun
  given-names: Johanna
  email: jobraun@pik-potsdam.de
  orcid: https://orcid.org/0000-0002-8809-1044
license: AGPL-3.0
repository-code: https://github.com/stenzelf/biospheremetrics

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Last synced: 6 months ago

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Top Authors
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  • gdkrmr (7)
  • stenzelf (1)
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Dependencies

DESCRIPTION cran
  • RColorBrewer * imports
  • abind * imports
  • circlize * imports
  • dplyr * imports
  • fBasics * imports
  • fields * imports
  • grDevices * imports
  • graphics * imports
  • lpjmlkit * imports
  • magrittr * imports
  • maps * imports
  • raster * imports
  • readr * imports
  • rgdal * imports
  • rlang * imports
  • sp * imports
  • stats * imports
  • tidyr * imports
  • utils * imports
  • yaml * imports
  • zoo * imports