Science Score: 67.0%
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
20 of 39 committers (51.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.6%) to scientific vocabulary
Keywords
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Repository
Epidemic simulation for MATSim
Basic Info
- Host: GitHub
- Owner: matsim-org
- License: agpl-3.0
- Language: Java
- Default Branch: develop
- Homepage: https://covid-sim.info
- Size: 106 MB
Statistics
- Stars: 23
- Watchers: 7
- Forks: 31
- Open Issues: 4
- Releases: 11
Topics
Metadata Files
README.md
MATSim Episim
This repository contains an epidemic simulation based on MATSim, provided by the Transport Systems Planning and Transport Telematics group of Technische Universität Berlin.
Dissemination of some scenarios and results produced with the methods in this repository can be found at https://matsim-vsp.github.io/covid-sim/.
How to use Episim
In order perform an epidemic simulation you first need an MATSim events file. To get started you can also use a provided event file from the OpenBerlin Scenario.
It is best to run the scenarios with your IDE from the org.matsim.run package.
In org.matsim.run.modules you can find example scenarios that you may adapt or use to create your own configuration.
To run them you can create a standalone jar file with:
mvn package
and run it with (where OpenBerlinScenario is the name of the scenario you want to run):
java -jar matsim-episim-1.0-SNAPSHOT.jar --modules OpenBerlinScenario
Generating mobility traces events file
If you have a MATSim scenario you can also create your own event file to be used for an epidemic simulation. All that is needed is the population and the event file of one iteration.
Run DownSampleScenario to extract the necessary information:
java -jar matsim-episim-1.0-SNAPSHOT.jar scenarioCreation downSample 0.1 \
--population <Path to plans.xml> --events <Path to events.xml>
This example will write a 10% sample into output that can be used in the subsequent steps.
Licenses
The MATSim program code in this repository is distributed under the terms of the GNU Affero General Public License. The MATSim program code are files that reside in the src directory hierarchy and typically end with *.java.
The MATSim input files, output files, analysis data and visualizations are licensed under a Creative Commons Attribution 4.0 International License.
MATSim input files are those that are used as input to run MATSim. They often, but not always, have a header pointing to matsim.org. They typically reside in the scenarios directory hierarchy. MATSim output files, analysis data, and visualizations are files generated by MATSim runs, or by postprocessing. They typically reside in a directory hierarchy starting with output.
Other data files, in particular in original-input-data, have their own individual licenses that need to be individually clarified with the copyright holders.
More information
For more information about the methodology and preliminary results, see VSP working paper https://dx.doi.org/10.14279/depositonce-9835 .
For more information about MATSim, see here: https://www.matsim.org/.
Owner
- Name: MATSim
- Login: matsim-org
- Kind: organization
- Website: www.matsim.org
- Repositories: 30
- Profile: https://github.com/matsim-org
Multi-Agent Transport Simulation
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: MATSim Episim
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Christian
family-names: Rakow
email: rakow@vsp.tu-berlin.de
affiliation: Technische Universität Berlin
orcid: 'https://orcid.org/0000-0003-3760-2243'
- given-names: Sebastian
family-names: Müller
email: mueller@vsp.tu-berlin.de
affiliation: Technische Universität Berlin
orcid: 'https://orcid.org/0000-0002-3103-8955'
- email: rehmann@vsp.tu-berlin.de
given-names: Jakob
family-names: Rehmann
affiliation: Technische Universität Berlin
- given-names: Sydney
family-names: Paltra
email: paltra@vsp.tu-berlin.de
affiliation: Technische Universität Berlin
- given-names: Ricardo
family-names: Ewert
email: ewert@vsp.tu-berlib.de
affiliation: Technische Universität Berlin
orcid: 'https://orcid.org/0000-0002-6973-3099'
- given-names: Kai
family-names: Nagel
email: nagel@vsp.tu-berlin.de
affiliation: Technische Universität Berlin
orcid: 'https://orcid.org/0000-0003-2775-6898'
url: "https://github.com/matsim-org/matsim-episim-libs"
date-released: 2022-12-09
year: 2022
version: 22.12
license: AGPL-3.0
GitHub Events
Total
- Watch event: 1
- Delete event: 1
- Push event: 44
- Pull request event: 4
- Create event: 4
Last Year
- Watch event: 1
- Delete event: 1
- Push event: 44
- Pull request event: 4
- Create event: 4
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Christian Rakow | r****w@v****e | 917 |
| smuellervsp | m****r@v****e | 584 |
| ikaddoura | k****a@v****e | 317 |
| kainagel | n****l@v****e | 290 |
| Jakob Rehmann | j****n@g****m | 263 |
| leich | l****h@v****e | 189 |
| tschlenther | s****r@v****e | 173 |
| Ricardo Ewert | r****t@c****e | 98 |
| rewert | e****t@v****e | 89 |
| kturner | m****r@v****e | 30 |
| Steffen Fürst (Mint@Home) | f****t@z****e | 25 |
| Kai Nagel | 2****8@k****g | 19 |
| rakow | r****w | 18 |
| kainagel | k****l | 10 |
| Hugo Alejandro Castro | c****o@v****e | 9 |
| Sydney Paltra | p****y@h****e | 8 |
| Michael Zilske | m****e@t****e | 7 |
| Kai Martins-Turner | k****r@c****e | 6 |
| hacas | h****s@D****7 | 6 |
| hao lutz | n****y@s****g | 3 |
| sebastianmuller | s****r@s****x | 3 |
| aravindsasi | a****9@g****m | 3 |
| dziemke | z****e@v****e | 3 |
| Paul Menzel | p****l@m****e | 2 |
| erica | e****a@D****2 | 2 |
| dependabot[bot] | 4****] | 2 |
| vsp-gleich | v****h | 2 |
| Sydpaltra | 6****a | 2 |
| Sydpaltra | p****a@t****e | 1 |
| mrieser | r****r@g****m | 1 |
| and 9 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 0
- Total pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: about 1 month
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: about 1 month
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- jakobrehmann (8)
- kainagel (2)
- dependabot[bot] (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- com.fasterxml.jackson.dataformat:jackson-dataformat-yaml 2.10.2
- com.fasterxml.jackson.datatype:jackson-datatype-jsr310 2.10.2
- com.github.ClickerMonkey:TrieHard 1.0
- com.lmax:disruptor 3.4.2
- com.typesafe:config 1.4.0
- commons-io:commons-io 2.7
- info.picocli:picocli 4.3.2
- it.unimi.dsi:fastutil 8.5.4
- org.apache.commons:commons-math3 3.6.1
- org.apache.poi:poi 4.1.2
- org.apache.poi:poi-ooxml 4.1.2
- org.jgrapht:jgrapht-core 1.5.0
- org.jgrapht:jgrapht-io 1.5.0
- org.matsim.contrib:vsp 13.0
- org.matsim:matsim 13.0
- tech.tablesaw:tablesaw-core 0.38.1
- tech.tablesaw:tablesaw-jsplot 0.38.1
- junit:junit 4.13.1 test
- org.assertj:assertj-core 3.15.0 test
- org.matsim:matsim 13.0 test
- org.mockito:mockito-core 3.3.3 test
- org.openjdk.jmh:jmh-core 1.23 test
- org.openjdk.jmh:jmh-generator-annprocess 1.23 test
- numpy >=1.19
- optuna ==1.5.0
- pandas >=1.1.1
- scikit-learn >=0.23
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-java v1 composite
- actions/checkout v2 composite
- actions/setup-java v1 composite