Recent Releases of viqa
viqa - v2.2.3
v2.2.3 (2025-04-10)
This release is published under the BSD-3-Clause License.
Bug Fixes
- Fix using Class attribute rois when not using the same roi for all images in BatchMetrics (
e98b15a)
Detailed Changes: v2.2.2...v2.2.3
- Python
Published by github-actions[bot] about 1 year ago
viqa - v2.2.2
v2.2.2 (2025-04-09)
This release is published under the BSD-3-Clause License.
Bug Fixes
Add check for image dimensions during loading (#15,
a120ade)fix: add check for image dimensions during loading
closes #14
- [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
refactor: refactor to comply with ruff
docs(load_data): add Exception to function docstring
Co-authored-by: Lukas Nepelius p42940@fhooe.at
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: lukasbehammer lukas.behammer@fh-wels.at
- Enable rois in BatchMetrics (
c2b0ce5)
closes #11
Fix rois in BatchMetrics.report when exporting images (
88c8931)Fix semantic release exclude commit pattern (
b24070e)
Documentation
- Refactor user guide (
c423f57)
Detailed Changes: v2.2.1...v2.2.2
- Python
Published by github-actions[bot] about 1 year ago
viqa - v2.2.0
v2.2.0 (2025-03-31)
Features
- feat: add script to crop images
update script to reduce projections, refactor scripts to comply with ruff linting rules (8a84d44)
Unknown
notebook: update notebook documentation (
779f7e7)notebook: update notebooks
refactor notebooks to comply with ruff rules (0de8543)
- Python
Published by github-actions[bot] about 1 year ago
viqa - v2.1.0
v2.1.0 (2025-03-06)
Bug Fixes
- fix: add function parsebitdepth to utils.loading.init.py
update docs for export_metadata (4cc8e5a)
- fix: fix integer overflow when loading large binary images (
567d0d7)
Documentation
- docs: update for new loading options
fix name "Structural Similarity" (16de59d)
Features
feat: add more .raw loading options (
598a5a6)feat: add visualization for different region types
add return of parameters for signaltonoise_ratio (6ea333a)
- Python
Published by github-actions[bot] about 1 year ago
viqa - v2.0.5
v2.0.5 (2024-11-18)
Bug Fixes
fix(crop_image): add checks if cropping is smaller than original image or image is already cropped (
bb930b0)fix: prevent forwarding of roi parameter in BatchMetrics.calculate (
ea35048)
Unknown
- books: update report exporting in batch mode notebook (
86c70b4)
- Python
Published by github-actions[bot] over 1 year ago
viqa - v2.0.4
v2.0.4 (2024-11-11)
Bug Fixes
- fix(multiple.py): fix delimiter sniffing
fix csv delimiter sniffing, add support for tsv and txt files during loading of pairs in BatchMetrics (dbd60ee)
Documentation
- docs: update README.md badge (
b5d0713)
- Python
Published by github-actions[bot] over 1 year ago
viqa - v2.0.0
v2.0.0 (2024-10-22)
Breaking
- refactor!: move utility modules to utils subpackage
BREAKING CHANGE: major refactoring of utility functions (d3945b4)
Bug Fixes
fix: convert rgb images to grayscale before binarization (
f258f96)fix: convert snr and cnr results to np.float64 (
3589350)fix(utils.py): fix visualization in getbinary
add slices to image visualization for 3d data (3afad3a)
- fix: change condition to check for provided snr and cnr parameters
fixes a NameError when calling snr or cnr methods without providing the center or radius parameters (Lookup in _parameter attribute fails when entries have not been created there before) (a6b3ec2)
fix: add additional checks for snr and cnr visualization (
accaf51)fix(utils.py): add check for image dimensions in export_image (
960b833)
Documentation
docs(load_data): update deprecation warning in docstring (
b3838f6)docs: update docs to exclude deprecation warning (
0a645f6)docs(utils): add examples in module docstrings (
dd590f6)docs: update docs according to d3945b47 (
772f430)docs: add public attribute parameters to class documentation (
1b2b00c)
Features
feat(export_image): add check for file extension (
977b7c8)feat(utils/export.py): add feature to return dict in export_results (
c30d368)feat: add functionality for different region types for snr and cnr
add findlargestregion to docs (7495cd1)
feat: add automatic background and signal center detection for cnr and snr (
1ea9310)feat: interactive centers for snr and cnr (
bfa5364)
Performance Improvements
- perf: update SSIM
update documentation, refactor definition of variable truncate (851521b)
- perf(ImageArray): calculate statistics only on method call
make sure that an ImageArray is returned via numpy ufunc (31524fb)
- Python
Published by github-actions[bot] over 1 year ago
viqa - v1.13.0
v1.13.0 (2024-09-24)
Documentation
docs: add internal API reference (
81a5950)docs: update docs
add visualize_2d to docs, fix cross-link for parameter image in MultipleMetrics.report (25f4e92)
Feature
feat(BatchMetrics): add image export in report method (
432c31e)feat(exportimage): add parameter showimage
add option to select if image should be printed when exporting images (5dff6a4)
- feat: add parameter project_name to report methods
filename is constructed of projectname and default filename if projectname is given (07541a6)
- Python
Published by github-actions[bot] over 1 year ago
viqa - v1.12.0
v1.12.0 (2024-09-04)
Feature
- feat: add function to create image report
move printimage method to utils.py as function and rename to exportimage, add parameter to change filename, fix bug when number of fr-metrics is not a multiple of four (cc8b4ff)
- Python
Published by github-actions[bot] over 1 year ago
viqa - v1.11.1
v1.11.1 (2024-09-04)
Documentation
docs: add pre-commit usage in developer guide (
4c313ab)docs: Update docs
update developer guide regarding docs generation, rename pages for utility modules and usage (4f35dd3)
Performance
- perf: improve performance of load_data
call ImageArray only at the end of load_data function and only if necessary (b3fdecd)
- perf: improve performance of BatchMetrics
add checks to load images only if not already in memory, add function to calculate no-reference metrics only if not already calculated (a0f3a26)
- Python
Published by github-actions[bot] over 1 year ago
viqa - v1.11.0
[!Warning] Package has wrong version number (1.11.0dev0 instead of 1.11.0)
v1.11.0 (2024-09-02)
Chore
- chore: update .pre-commit-config.yaml
add submodule checkout, add custom autoupdate commit message, change sphinx building stage to pre-push (8998a73)
- chore: update LICENSE.txt
include License statement for qmeasure submodule, fix file paths, update style (4ec7e17)
Ci
ci: add recursive checkout (
ef72c4a)ci: make checkout branch variable for wheel and sdist building
set checkout branch for semantic_release to main (59d0375)
- ci: remove sleep step in job test_install (
fde39ba)
Feature
- feat: add function to crop images
cal cropping function during loading if parameter roi is given (140d101)
Refactor
- refactor: add warning to visualize method in class ImageArray
add warning that parameter slices will be ignored if method is called on a 2D image (cd496be)
- refactor: handle data loading in interface classes
move data loading and checking to score methods of metrics interface classes (1ad011b)
- refactor: use qmeasure submodule (
1c1ae61)
- Python
Published by github-actions[bot] over 1 year ago
viqa - v1.10.0
v1.10.0 (2024-08-27)
Chore
chore: update docs config to autodocument inherited members (
9bc640f)chore: update documentation build
add dependencies for Sphinx in GitHub Actions job (4596169)
- chore: update release process
build only after semantic_release job ran (5fe798c)
Documentation
- docs: update docs
remove sphinx-notfound-page, temporarily disable hoverxref (614d52a)
- docs: add sphinx-autobuild to developer_guide.rst (
59381a4)
Feature
- feat: add function to compute multiple metrics at once
rename batchmode.py to multiple.py, add MultipleMetrics class, move exportmetadata to it's own function in utils.py, add base class for classes of type multiple, update class BatchMetrics (6f4f8a7)
Refactor
- refactor: add new parent class metric
rename exportcsv to exportresults, restructure abstract base classes for metrics (4bc3bef)
Unknown
- book: update Image_Comparison.ipynb accordingly to 6f4f8a77 (
8ac53e8)
- Python
Published by github-actions[bot] almost 2 years ago
viqa - v1.9.1
[!Warning] Package has wrong version number (1.9.0 instead of 1.9.1)
v1.9.1 (2024-08-23)
Chore
- chore: change GitHub emojis to emoji characters in README.md
improve rendering for PyPI (0a04811)
- chore: update automatic build process in buildwheelsand_publish.yaml (
bcdc3b1)
Documentation
- docs: update docs
multiple changes to docstrings and docs rendering and docs building (080045f)
Fix
- fix: use ImageArray instead of np.ndarray
update according to 40f0d029ad416747135f79e8716de040335da592, fixes mypy (4ecfc86)
- Python
Published by github-actions[bot] almost 2 years ago
viqa - v1.9.0
v1.9.0 (2024-08-22)
Build
build: set specific meson and meson-python versions (
e395ba2)build: remove support for Python 3.13 until in stable
Python 3.13 build takes too long or fails, add specific dependency version for meson-python (d6dd0e6)
Chore
- chore: update .gitignore
remove docs/source/**/generated/ files (be86072)
Feature
feat(batchmode.py): add parameter datarange to export_metadata (
00cb4c4)feat: add parameter to set order of scaling in batch_mode.py (
0c3886c)
Fix
- fix: add Exception and warning to handle non 3D volumes in qmeasure.py (
33e288a)
- Python
Published by github-actions[bot] almost 2 years ago
viqa - v1.8.0
v1.8.0 (2024-08-22)
Build
- build: update numpy dependency for build to be lower than 2.0.0 (
54ac725)
Chore
chore: remove check install job from buildwheelsand_publish.yaml (
235cd1c)chore: use pip instead of pip3 in check_import job (
d739e83)chore: add Set up Python step check_import job (
70448e3)chore: add -vv argument in check_import job for debugging (
03e50b1)chore: fix check_import job to use non-editable install (
e772e8f)chore: move isort config from ruff.isort to ruff.lint.isort (
8d7f21b)chore: update release process in buildwheelsand_publish.yaml
add check for import to catch non-importable releases, add upload to TestPyPI and check installing from there before real upload (53d69e9)
Documentation
- docs: update Tuple order for visualization methods in snr.py and cnr.py
change Tuple order according to 4d7c3e02 and 0bab2b85 (3aef76d)
Feature
feat: add 2D visualization for class ImageArray (
d09dfad)feat: add parameter to export image in visualization functions (
6e418e2)
Fix
- fix: update 2D visualization for snr and cnr
fix visualization based on 4d7c3e02 (0bab2b8)
- Python
Published by github-actions[bot] almost 2 years ago
viqa - v1.7.0
v1.7.0 (2024-08-22)
Chore
- chore: update version to 1.6.1
fix versioning for python-semantic-release (6d00255)
Ci
- ci: add commit type book to python semantic release (
ec50245)
Documentation
- docs: update docstring for loadutils.py:loadraw
add periods to sentences in the "Raises" section of docstring (c3f3591)
- docs: add pre-commit.ci status badge (
b02ca8b)
Feature
- feat: add custom visualization
add method for class ImageArray and function visualize_3d for custom visualization of slices of 3d volumes, update documentation for the respective method and function (8423592)
Fix
- fix: change orientation of loaded image array
add rotation and flip when loading from binary, update visualization functions for cnr and snr (4d7c3e0)
Performance
- perf: use attribute of class ImageArray for method describe
attribute mean_value in method describe is now used, fix documentation for class ImageArray (b0830cf)
Unknown
- book: update visualization in jupyter notebooks
visualization now reflects the changes in commit 4d7c3e02 (7d94131)
- Python
Published by github-actions[bot] almost 2 years ago
viqa - v1.6.1
[!Warning] Package has wrong version number (1.6.0dev0 instead of 1.6.1)
v1.6.1 (2024-08-20)
Ci
ci: add Setup Python step before Test install from PyPI (
4471af6)ci: skip build-docs and mypy on pre-commit.ci (
32654c5)
Fix
- fix: remove init.py files for C extensions
import of the package is now possible again (e747cf7)
- Python
Published by github-actions[bot] almost 2 years ago
viqa - v1.6.0 BROKEN
[!Caution] Import not working due to init.py files for C extensions
v1.6.0 (2024-08-20)
Ci
- ci: update .pre-commit-config.yaml
exclude CHANGELOG.md and CODEOFCONDUCT.md from codespell hook, activate sphinx hook for push only, remove stage commit from validate-pyproject hook, add exclude for conda recipes for check-yaml hook (d84c21f)
- ci: update buildwheelsand_publish.yaml
remove vcsrelease="false" argument from semanticrelease job, update test install (2eae29e)
- ci: add specific code checkout to buildwheelsand_publish.yaml
add "ref: main" to checkout step to ensure checking out the latest commit, temporarily deactivate conditions for jobs to release last version (9e8b5ce)
Documentation
docs: change title of Changelog page to Release History (
ef913a6)docs: add changelog page (
730ecf1)docs: add contributor covenant shield (
1ab08c1)
Feature
- feat(load_utils.py): add support for .tiff files (
a7c8b74)
Unknown
- Create CODEOFCONDUCT.md (
3860e91)
- Python
Published by github-actions[bot] almost 2 years ago
viqa - v1.5.2 BROKEN
[!Caution] Import not working due to init.py files for C extensions
v1.5.2 (2024-08-16)
Build
build: add stub files and init.py files for C extensions to build process (
6251b98)build: update buildwheelsand_publish.yaml
add fetch_depth for code checkout (1fd84d2)
- build: update workflows
add pull_request trigger for Build, add concurrency for Documentation, add event trigger for Documentation (6e8bc98)
- build: fix buildwheelsand_publish.yaml
add code checkout to github release job (e2c9a39)
Chore
chore: update PyPI classifiers (
21a1994)chore: add CONTRIBUTING.md (
8491e64)chore: update dev dependencies (
ac22ca6)chore: remove sphinx from pre-commit (
2372f99)chore: update args for pre-commit-sphinx (
c672fa5)chore: update dev dependencies (
d769aab)chore: add pre-commit (
83c300c)chore: add lint rules to ignore
ignore E203 and C901 (1372c60)
Ci
- ci: update buildwheelsand_publish.yaml
perform jobs only if condition released == true is met, add explicit tag for upload_github job (c941bd9)
Documentation
- docs: update README.md
update Project Status badge to Active, clear todo list, add contributing, improve documentation (503e4f7)
- docs: rename batch mode page
make "Module" lowercase as all other modules (e1105e1)
docs: restructure docs into api reference and usage page (
0dad6df)docs: add developer guide (
5282655)docs: add favicon (
f2b6ee1)
Fix
- fix(mad.py): update check for im_slice
in (int or None) int can always be evaluated as true (a245fe9)
Refactor
- refactor: update test assertion
change is 255 to == 255 (df39f34)
Style
style: update end of file new line (
3c89f86)style: format files
remove trailing whitespace, adjust end of files (1cc275c)
- style: add mypy check
implement mypy check, update files for mypy, add stub files qmeasurecalc.pyi and statisticscalc.pyi (1997516)
- style: add yamllint
implement yamllint and refactor .yaml files (6c46ace)
- style: add rst check
implement rst check and refactor .rst files (92f2dbd)
- style: update formatting
use ruff formater to format codebase (dc48022)
- style: update linting
fix and update ruff config, fix lint errors (452b6fc)
Unknown
- Merge remote-tracking branch 'github/main' (
609891d)
- Python
Published by lukasbehammer almost 2 years ago