Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/cheminfo/mzdata

Read and explore mzData files.

https://github.com/cheminfo/mzdata

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.7%) to scientific vocabulary

Keywords

mzdata parser

Keywords from Contributors

nmr nmr-spectroscopy
Last synced: 5 months ago · JSON representation

Repository

Read and explore mzData files.

Basic Info
Statistics
  • Stars: 2
  • Watchers: 4
  • Forks: 3
  • Open Issues: 4
  • Releases: 7
Topics
mzdata parser
Created over 9 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog License

README.md

History of formats

https://dx.doi.org/10.1074/mcp.R110.000133

  • mzData was developed by HUPO-PSI
    • http://psidev.info/index.php?qnode/80#mzdata
    • https://doi.org/10.1002/pmic.200300588
  • mzXML was developed at the Institute for Systems Biology
  • mzML: new unified output format started in 2006

mzML - 4 goals:

  • creation of a simple format
  • elimination of alternate ways to encode the same information
  • support for all the features of both mzXML and mzData
  • validation through implementation prior to release.

mzml

cv = Controlled Volabulatry

mzData

NPM version build status Test coverage npm download

Read and explore xml files used to encode mass spectra.

This includes:

  • mzData
  • mzML
  • mzXML

Installation

$ npm install --save mzdata

Usage

```js import { parseMZ } from 'mzdata';

// mzData files const mzDataFile = readFileSync(__dirname + '/tiny.mzData.xml'); var response = await parseMZ(mzDataFile); ```

Ontology

Ontology

More examples

You can find various examples files at:

http://www.psidev.info/mzML

License

MIT

Owner

  • Name: Cheminfo
  • Login: cheminfo
  • Kind: organization

GitHub Events

Total
  • Release event: 2
  • Watch event: 1
  • Issue comment event: 3
  • Push event: 14
  • Pull request event: 5
  • Fork event: 1
  • Create event: 3
Last Year
  • Release event: 2
  • Watch event: 1
  • Issue comment event: 3
  • Push event: 14
  • Pull request event: 5
  • Fork event: 1
  • Create event: 3

Committers

Last synced: 8 months ago

All Time
  • Total Commits: 105
  • Total Committers: 4
  • Avg Commits per committer: 26.25
  • Development Distribution Score (DDS): 0.286
Past Year
  • Commits: 11
  • Committers: 2
  • Avg Commits per committer: 5.5
  • Development Distribution Score (DDS): 0.182
Top Committers
Name Email Commits
Luc Patiny l****c@p****m 75
Miguel Angel Asencio Hurtado m****h@g****m 21
cheminfo-bot 1****t 7
Javier Osorio M 3****m 2
Committer Domains (Top 20 + Academic)
patiny.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 7
  • Total pull requests: 12
  • Average time to close issues: about 2 months
  • Average time to close pull requests: about 20 hours
  • Total issue authors: 2
  • Total pull request authors: 4
  • Average comments per issue: 0.71
  • Average comments per pull request: 1.25
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 12 minutes
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 1.67
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • lpatiny (4)
  • maasencioh (3)
Pull Request Authors
  • cheminfo-bot (9)
  • josoriom (2)
  • maasencioh (2)
  • lpatiny (2)
Top Labels
Issue Labels
hacktoberfest (2)
Pull Request Labels
autorelease: tagged (5) autorelease: pending (4)

Dependencies

package.json npm
  • @babel/plugin-transform-modules-commonjs ^7.17.9 development
  • @types/jest ^27.5.0 development
  • cheminfo-build ^1.1.11 development
  • eslint ^8.15.0 development
  • eslint-config-cheminfo ^7.3.0 development
  • jest ^28.1.0 development
  • prettier ^2.6.2 development
  • rollup ^2.72.1 development
  • arraybuffer-xml-parser ^0.5.0
  • base64-arraybuffer ^1.0.2
  • camelcase ^6.3.0
  • pako ^2.0.4
  • uint8-base64 ^0.1.1
.github/workflows/documentationjs.yml actions
  • JamesIves/github-pages-deploy-action releases/v4 composite
  • actions/checkout v2 composite
  • zakodium/documentationjs-action v1 composite
.github/workflows/nodejs.yml actions
.github/workflows/release.yml actions