gvp_science
Data and Code to reproduce the supplementary materials of Carroll et al. 2018, "The Global Virome Project."
Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.9%) to scientific vocabulary
Repository
Data and Code to reproduce the supplementary materials of Carroll et al. 2018, "The Global Virome Project."
Basic Info
- Host: GitHub
- Owner: ecohealthalliance
- Language: R
- Default Branch: master
- Homepage: http://science.sciencemag.org/content/359/6378/872
- Size: 847 KB
Statistics
- Stars: 2
- Watchers: 3
- Forks: 6
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
GVP_Science
Data and Code to reproduce the supplementary materials of Carroll et al. 2018, "The Global Virome Project."
Listing of files
├── README.md | This file
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├── GVP_Science.Rproj | Rstudio project organization file
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├── data/
| ├── macaque_data.xlsx | macaque viral discovery matrix from DOI:10.1038/ncomms9147
| ├── pteropus_data.csv | bat viral discovery matrix from DOI:10.1128/mBio.00598-13
| ├── GVP_costs_from_anthony2013.xlsx | calculations to determine costs of GVP, based on supplementary material from DOI:10.1128/mBio.00598-13
| ├── output
| | ├── macaca_estimates_by_viral_family.csv | macaque viral estimates at the family level
| └── └── pteropus_estimates_by_viral_family.csv | pteropus viral estimates at the family level
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├── R/
| ├── macaque_validation_anthony_2015.R | code to estimate viral family richness in macaques
| ├── pteropus_validation_anthony_2013.R | code to estimate viral family richness in pteropus
| ├── macaque_graphs.R | graph viral discovery at the viral family level in macaques
| ├── pteropus_graphs.R | graph viral discovery at the viral family level in P. giganteus
| ├── GVP_SOM.R | calculate mean number of viruses per viral family
| └── virome_estimates_pteropus_7079.R | code to calculate vir % up to 7079 samples as used in Anthony 2013
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├── figs
| ├── macaca_viral_discovery_by_family.png
└── └── pteropus_viral_discovery_by_family.png
Owner
- Name: EcoHealth Alliance
- Login: ecohealthalliance
- Kind: organization
- Email: tech@ecohealthalliance.org
- Location: New York, NY
- Website: http://ecohealthalliance.org/
- Repositories: 199
- Profile: https://github.com/ecohealthalliance
GitHub Events
Total
- Fork event: 1
Last Year
- Fork event: 1
Committers
Last synced: 10 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Brooke Watson | w****n@e****g | 8 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0