brainglobe-utils
Shared general purpose tools for the BrainGlobe project
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.3%) to scientific vocabulary
Repository
Shared general purpose tools for the BrainGlobe project
Basic Info
Statistics
- Stars: 12
- Watchers: 3
- Forks: 3
- Open Issues: 11
- Releases: 23
Metadata Files
README.md
brainglobe-utils
Shared general purpose tools for the BrainGlobe project, including citation generation.
Installation
bash
pip install brainglobe-utils
To also include the dependencies required for Qt widgets, use:
bash
pip install brainglobe-utils[qt]
For development, clone this repository and install the dependencies with:
bash
pip install -e .[dev]
Seeking help or contributing
We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the contact page of our website.
Citations for BrainGlobe tools
brainglobe-utils comes with the cite-brainglobe command line tool, to write citations for BrainGlobe tools for you so you don't need to worry about fetching the data yourself.
You can read about how to use the tool on the documentation website.
Owner
- Name: BrainGlobe
- Login: brainglobe
- Kind: organization
- Location: London/Munich
- Website: https://brainglobe.info/
- Twitter: brain_globe
- Repositories: 28
- Profile: https://github.com/brainglobe
Open python tools for morphological analyses in systems neuroscience
Citation (CITATION.cff)
cff-version: 1.2.0
title: brainglobe-utils
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Brainglobe
family-names: Developers
email: hello@brainglobe.info
repository-code: 'https://github.com/brainglobe/brainglobe-utils'
url: 'https://brainglobe.info/'
abstract: Shared general purpose tools for the BrainGlobe project.
license: BSD-3-Clause
year: 2024
month: 01
GitHub Events
Total
- Issues event: 8
- Watch event: 1
- Delete event: 17
- Issue comment event: 41
- Push event: 25
- Pull request review event: 17
- Pull request event: 40
- Fork event: 2
- Create event: 17
Last Year
- Issues event: 8
- Watch event: 1
- Delete event: 17
- Issue comment event: 41
- Push event: 25
- Pull request review event: 17
- Pull request event: 40
- Fork event: 2
- Create event: 17
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 27
- Total pull requests: 74
- Average time to close issues: about 1 month
- Average time to close pull requests: 3 days
- Total issue authors: 6
- Total pull request authors: 9
- Average comments per issue: 1.11
- Average comments per pull request: 1.47
- Merged pull requests: 61
- Bot issues: 0
- Bot pull requests: 17
Past Year
- Issues: 5
- Pull requests: 21
- Average time to close issues: 6 minutes
- Average time to close pull requests: 2 days
- Issue authors: 3
- Pull request authors: 6
- Average comments per issue: 0.2
- Average comments per pull request: 1.24
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 10
Top Authors
Issue Authors
- K-Meech (10)
- adamltyson (7)
- alessandrofelder (5)
- matham (2)
- niksirbi (2)
- PolarBean (1)
Pull Request Authors
- pre-commit-ci[bot] (19)
- K-Meech (15)
- adamltyson (14)
- IgorTatarnikov (10)
- alessandrofelder (8)
- willGraham01 (7)
- matham (4)
- lochhh (1)
- niksirbi (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 5,183 last-month
- Total dependent packages: 11
- Total dependent repositories: 2
- Total versions: 25
- Total maintainers: 1
pypi.org: brainglobe-utils
Shared general purpose tools for the BrainGlobe project
- Documentation: https://brainglobe-utils.readthedocs.io/
- License: MIT License Copyright (c) 2020 Adam Tyson Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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Latest release: 0.7.0
published over 1 year ago
Rankings
Maintainers (1)
Dependencies
- actions/download-artifact v3 composite
- neuroinformatics-unit/actions/build_sdist_wheels v2 composite
- neuroinformatics-unit/actions/lint v2 composite
- neuroinformatics-unit/actions/test v2 composite
- pypa/gh-action-pypi-publish v1.5.0 composite
- PyYAML *
- configobj *
- natsort *
- pandas *
- psutil *
- pytest-qt *
- scikit-image *
- scipy *
- slurmio *
- tqdm *