readfcs

Read fcs files.

https://github.com/laminlabs/readfcs

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
Found 2 DOI reference(s) in README
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Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (7.2%) to scientific vocabulary

Last synced: 6 months ago · JSON representation ·

Repository

Read fcs files.

Basic Info

Host: GitHub
Owner: laminlabs
License: apache-2.0
Language: Python
Default Branch: main
Homepage: https://readfcs.lamin.ai/
Size: 6.57 MB

Statistics

Stars: 13
Watchers: 3
Forks: 2
Open Issues: 0
Releases: 25

Created almost 4 years ago · Last pushed about 1 year ago

Metadata Files

Readme License Citation

README.md

readfcs: Read FCS files

Lightweight Python library to load data and metadata from Flow Cytometry Standard (FCS) files into DataFrame and AnnData objects.

Install: pyversions

bash $ pip install readfcs

Get started:

```python import readfcs

readfcs.read() # Read FCS files into AnnData

readfcs.ReadFCS() # Debug possible integrity issues in your FCS files ```

Read the docs or read the blog post.

Owner

Name: Lamin
Login: laminlabs
Kind: organization

Website: https://lamin.ai
Twitter: laminlabs
Repositories: 13
Profile: https://github.com/laminlabs

Data infrastructure for biology.

Citation (CITATION.cff)

cff-version: 1.2.0
title: "readfcs: Read FCS files"
authors:
  - family-names: Sun
    given-names: Sunny
    orcid: https://orcid.org/0000-0002-2365-0888
  - family-names: Wolf
    given-names: F. Alexander
    orcid: https://orcid.org/0000-0002-8760-7838
url: https://github.com/laminlabs/readfcs
preferred-citation:
  type: article
  title: "readfcs: Read FCS files"
  authors:
    - family-names: Sun
      given-names: Sunny
      orcid: https://orcid.org/0000-0002-2365-0888
    - family-names: Wolf
      given-names: F. Alexander
      orcid: https://orcid.org/0000-0002-8760-7838
  doi: 10.56528/rfcs
  journal: Lamin Reports
  year: 2022

GitHub Events

Total

Create event: 7
Issues event: 5
Release event: 3
Delete event: 5
Issue comment event: 7
Push event: 22
Pull request event: 9

Last Year

Create event: 7
Issues event: 5
Release event: 3
Delete event: 5
Issue comment event: 7
Push event: 22
Pull request event: 9

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 7
Total pull requests: 38
Average time to close issues: 3 months
Average time to close pull requests: about 1 hour
Total issue authors: 4
Total pull request authors: 3
Average comments per issue: 2.14
Average comments per pull request: 1.32
Merged pull requests: 37
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 2
Pull requests: 6
Average time to close issues: about 13 hours
Average time to close pull requests: 24 minutes
Issue authors: 2
Pull request authors: 3
Average comments per issue: 1.0
Average comments per pull request: 0.83
Merged pull requests: 5
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

sunnyosun (3)
grst (2)
oskbor (1)
falexwolf (1)

Pull Request Authors

sunnyosun (34)
Zethson (4)
Koncopd (3)

Top Labels

Issue Labels

enhancement (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- pypi 13,463 last-month

Total dependent packages: 5
Total dependent repositories: 1
Total versions: 27
Total maintainers: 3

pypi.org: readfcs

Parse fcs files into AnnData.

Homepage: https://github.com/laminlabs/readfcs
Documentation: https://readfcs.readthedocs.io/
License: Apache Software License
Latest release: 2.0.1
published about 1 year ago

Versions: 27
Dependent Packages: 5
Dependent Repositories: 1
Downloads: 13,463 Last month

Rankings

Dependent packages count: 1.6%

Downloads: 5.6%

Average: 15.1%

Stargazers count: 17.1%

Dependent repos count: 21.6%

Forks count: 29.8%

Maintainers (3)

lamindev Koncopd sunnyosun