distance_distribution_analysis_of_mfish_data_reveals_microphase_coexistence
Science Score: 44.0%
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○Scientific vocabulary similarity
Low similarity (4.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: Loucif-REMINI
- Language: Jupyter Notebook
- Default Branch: main
- Size: 6.41 MB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
This project is a comprehensive analysis of multiplexed FISH (Fluorescence In Situ Hybridization) data, based on the studies by Bintu et al. (2018) and Liu et al. (2020). The primary objectives of this project are to investigate chromatin structure, analyze pairwise probability distance distributions, and explore the scaling behavior of chromatin phases. The combined analysis of human and mouse data enhances the understanding of chromatin structure across different species, offering a comprehensive view of chromatin organization and its scaling properties.
The project is implemented in Python and utilizes various scientific libraries such as NumPy, SciPy, and Matplotlib for data processing, analysis, and visualization. The results provide valuable insights into the chromatin structure and its scaling laws, contributing to the understanding of chromatin organization in different cell types.
Owner
- Name: Loucif Remini
- Login: Loucif-REMINI
- Kind: user
- Repositories: 1
- Profile: https://github.com/Loucif-REMINI
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: >-
Analysis of mFISH chromatin data from human and mouse
cells
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Loucif
family-names: Remini
email: reminiloucif@gmail.com
orcid: 'https://orcid.org/0000-0001-8790-881X'
- given-names: Midas
family-names: Segers
orcid: 'https://orcid.org/0000-0002-1298-759X'
- given-names: Andrea
family-names: Parmeggiani
orcid: 'https://orcid.org/0000-0003-3025-4266'
- given-names: Enrico
family-names: Carlon
orcid: 'https://orcid.org/0000-0001-8266-1096'
identifiers:
- type: other
value: >-
Loucif Remini, Midas Segers, Andrea Parmeggiani,
Enrico Carlon. Inferring interphase chromosomal
structure from multiplexed fluorescence in situ
hybridization data: a unified picture from human and
mouse cells. 2024. ⟨hal-04741167⟩
repository-code: >-
https://github.com/Loucif-REMINI/Distance_distribution_analysis_of_mFISH_data_reveals_microphase_coexistence
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