priorelicitation

Shiny application for prior elicitation experiments from "Probabilistic elicitation of expert knowledge through assessment of computer simulations"

https://github.com/ocbe-uio/priorelicitation

Science Score: 62.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
✓
Academic publication links
Links to: zenodo.org
○
Academic email domains
✓
Institutional organization owner
Organization ocbe-uio has institutional domain (www.med.uio.no)
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (15.9%) to scientific vocabulary

Keywords

bayesian-optimization likelihood-free-inference prior-elicitation python shiny

Last synced: 4 months ago · JSON representation ·

Repository

Shiny application for prior elicitation experiments from "Probabilistic elicitation of expert knowledge through assessment of computer simulations"

Basic Info

Host: GitHub
Owner: ocbe-uio
License: gpl-3.0
Language: R
Default Branch: release-1.0.0
Homepage: https://arxiv.org/abs/2002.10902
Size: 285 KB

Statistics

Stars: 1
Watchers: 2
Forks: 0
Open Issues: 0
Releases: 3

Topics

bayesian-optimization likelihood-free-inference prior-elicitation python shiny

Created almost 6 years ago · Last pushed about 4 years ago

Metadata Files

Readme License Citation

Introduction

This is a web application for collecting data from content "specialists" in order to elicit prior distributions. It is written using Shiny, R and Python.

A screenshot

Using

Online version

Please visit the following URL to use the PriorElicitation app on your browser:

https://ocbe.shinyapps.io/elicit/

This online version is currently running on a low-powered server at Shinyapps.io and is prone to instabilities. If you encounter errors while using the software, please use local hosting to run the app from your own computer (next section).

Local hosting

You can host the app on your computer, which is especially useful for developers. The app also runs noticeably faster locally than it does on the Shinyapps server.

Dependencies

The Prior Elicitation Shiny app depends on a few R packages to run. You can either visually check the list below or run that command once to make sure you have all the required dependencies installed:

R install.packages(c("shiny", "reticulate", "rdrop2", "shinyjs", "scatterplot3d", "shinycssloaders"))

Running the app

Once you have all dependencies installed, run the following command from an interactive R session:

R shiny::runGitHub("PriorElicitation", "ocbe-uio", "release-1.0.0", "Shiny")

If you have Make installed, you can also conviently run PriorElicitation from the command line with make run.

Contributing

This is Open Source software and all contributions are welcome. If you would like to report a bug or request a feature, please open an issue on the Issues page.

Citing

This project uses the Citation File Format (CFF), a human- and machine-readable format in YAML. Please refer to the citation metadata in CITATION.cff. APA- and BibTeX-formatted citations of this software are also available on the "Cite this repository" button at the top of the right panel of the main repository page. Also, please remember to use the Digital Object Identifier shown at the top of this file.

Owner

Name: Oslo Centre for Biostatistics and Epidemiology
Login: ocbe-uio
Kind: organization
Location: Oslo, Norway

Website: https://www.med.uio.no/imb/english/research/centres/ocbe/
Twitter: OCBE_UniOslo
Repositories: 22
Profile: https://github.com/ocbe-uio

This is where we host some of the scientific software we produce at OCBE, a joint center between the University of Oslo and the Oslo University Hospital.

Citation (CITATION.cff)

# YAML 1.2
---
message: "If you use this software, please cite it using these metadata"
authors:
  -
    family-names: Thomas
    given-names: Owen Matthew Truscott
    email: "o.m.t.thomas@medisin.uio.no"
    affiliation: "Oslo Centre for Biostatistics and Epidemiology"
  -
    family-names: Leoncio
    given-names: Waldir
    name-suffix: Netto
    email: "w.l.netto@medisin.uio.no"
    affiliation: "Oslo Centre for Biostatistics and Epidemiology"
  -
    family-names: Pesonen
    given-names: Henri
    email: "henri.pesonen@medisin.uio.no"
    affiliation: "Oslo Centre for Biostatistics and Epidemiology"
  -
    family-names: Corander
    given-names: Jukka
    email: "jukka.corander@medisin.uio.no"
    affiliation: "Oslo Centre for Biostatistics and Epidemiology"
title: A Shiny app for prior elicitation
version: 1.0.0-candidate+6
date-released: 2021-01-11
license: GPL-3.0-or-later
cff-version: 1.1.0

GitHub Events

Total

Last Year

Issues and Pull Requests

Last synced: 10 months ago

All Time

Total issues: 18
Total pull requests: 0
Average time to close issues: 3 months
Average time to close pull requests: N/A
Total issue authors: 1
Total pull request authors: 0
Average comments per issue: 1.39
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science