cm4ai-schemas - cm4ai-schemas V0.1.1

Repository of Schemas used for data validation in the NIH CM4AI Project. To be used in conjunction with the fairscape-cli tool to validate tabular and image data formats.

FAIRSCAPE is supported by the U.S. National Institutes of Health Bridge2AI program under grants OT2OD032742 [Bridge2AI: Cell Maps for AI (CM4AI) Data Generation Project] and OT2OD032701 [Bridge2AI: Patient-Focused Collaborative Hospital Repository Uniting Standards (CHoRUS) for Equitable AI], and by the Frederick Thomas Fund of the University of Virginia.

Published by mlev71 over 1 year ago

cm4ai-schemas - v0.1.0

This release contains schemas for the existing CM4AI cellmaps workflow. And has been tested against the existing data release. The steps of the process supported for data validation and the files within those steps are as follows.

• APMS Loader
  • ppi_edgelist.tsv
  • ppi_gene_node_attributes.tsv
• Image Loader
  • samplescopy.csv
  • uniquecopy.csv
• APMS Embedding
  • ppi_emd.tsv
• Image Embedding
  • image_emd.tsv
  • labels_prob.tsv
• Co-embedding
  • coembedding_emd.tsv

Published by mlev71 about 2 years ago