Recent Releases of damid-seq
damid-seq - v0.5.0
Changes:
- Ability to run workflow containerized using Apptainer (from Docker image).
- Consensus peaks now cover area of all overlapping peaks, instead of just the overlapping area.
- Pathway enrichment analysis of peaks associated with consensus peaks.
- When masking gene sequences from the fasta file, the whole gene sequence can be masked or just exonic sequences.
- and more...
- Python
Published by niekwit over 1 year ago
damid-seq - v0.4.0
Added new functions:
- Peak calling with MACS2 (broad or narrow)
- Ability to remove sequences from trimmed data that match a given fasta file
- PCA plot from bam files in addition to bedgraph files
- More control over damidseq_pipeline via config file
- Python
Published by niekwit almost 2 years ago