https://github.com/chris-n-k/napari-itk-io
File IO with itk for napari.
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.2%) to scientific vocabulary
Repository
File IO with itk for napari.
Basic Info
Statistics
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
napari-itk-io
Image metadata, e.g. the pixel spacing, origin, and metadata tags, are preserved and passed into napari.
Supported image file formats:
- BioRad
- BMP
- DICOM
- DICOM Series
- ITK HDF5
- JPEG
- GE4,GE5,GEAdw
- Gipl (Guys Image Processing Lab)
- LSM
- MetaImage
- MINC 2.0
- MGH
- MRC
- NifTi
- NRRD
- Portable Network Graphics (PNG)
- Tagged Image File Format (TIFF)
- VTK legacy file format for images
For DICOM Series, select the folder containing the series with File -> Open Folder.... The first series will be selected and sorted spatially.
Installation
You can install napari-itk-io via pip:
pip install napari-itk-io
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Follow the itk contributing guidelines and the itk code of conduct.
License
Distributed under the terms of the Apache Software License 2.0 license, "napari-itk-io" is free and open source software.
Issues
If you encounter any problems, please file an issue along with a detailed description.
Owner
- Name: Christopher Nauroth-Kreß
- Login: Chris-N-K
- Kind: user
- Location: Würzburg, Germany
- Company: University Hospital Würzburg - Institute of Neuroradiology
- Repositories: 3
- Profile: https://github.com/Chris-N-K
PhD Candidate, MSc Biosciences
GitHub Events
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Dependencies
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- actions/checkout v2 composite
- actions/setup-python v2 composite
- codecov/codecov-action v2 composite
- tlambert03/setup-qt-libs v1 composite