shellbedcondensator
Shiny app visualizing the effects of sedimentary condensation
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 9 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.1%) to scientific vocabulary
Keywords
Repository
Shiny app visualizing the effects of sedimentary condensation
Basic Info
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 1
- Releases: 2
Topics
Metadata Files
README.md
The Shellbed Condensator
Shiny app to visualize the effects of changing sedimentation rates on formation of fossil accumulations.
Authors
Niklas Hohmann (Maintainer)
Utrecht University
email: n.h.hohmann [at] uu.nl
Web page: uu.nl/staff/NHohmann
ORCID: 0000-0003-1559-1838
Emilia Jarochowska
Utrecht University
email: e.b.jarochowska [at] uu.nl
Web page: www.uu.nl/staff/EBJarochowska
ORCID: 0000-0001-8937-9405
Requirements
R (version >= 3.0.2), RStudio IDE.
Online Usage
The app can be used online at utrecht-university.shinyapps.io/ShellbedCondensator. Online usage does not require an installation of R.
Offline Usage
Open the file ShellbedCondensator.Rproj in the RStudio IDE. This will open the RProject, and install the renv package (if not already installed). Then run
R
renv::restore()
in the console to install all dependencies required for the app. To run the app, use
R
shiny::runApp()
Repository structure
- LICENSE.md : Apache 2.0 license text
- README.md : Readme file
- CITATION.cff : Citation info
- app.R : R code to start app. Contains app architecture
- renv.lock : lockfile for
renvpackage - zenodo.json : Zenodo metadata
- renv : folder for
renvpackage - src : Folder for code
- condensator.R : Generates model outputs from user input
- condensatorplot.R_ : Generates plots from model outputs
- www : Folder with pictures used in the app
- people : Folder with pictures of authors
- logos : Folder with logos
- geology : Folder with pictures of shell accumulations and stratigraphic columns
- .github : GitHub actions
License
Apache 2.0, see LICENSE file for details
Citation
To cite the app, please use
- Hohmann, N., & Jarochowska, E. (2023). Shellbed Condensator (v1.0.0). Zenodo. DOI: 10.5281/zenodo.7739986
References
The model underlying the app is described in
- Hohmann, N.: Incorporating Information on Varying Sedimentation Rates in Paleontological Analyses. PALAIOS, 2021. doi: 10.2110/palo.2020.038
The app uses the shiny package:
- Chang W, Cheng J, Allaire J, Sievert C, Schloerke B, Xie Y, Allen J, McPherson J, Dipert A, Borges B (2022). shiny: Web Application Framework for R. R package version 1.7.3, https://CRAN.R-project.org/package=shiny.
Funding information
Online access to the App is made possible by the IDUB programme of the University of Warsaw (Grant BOB-IDUB-622-18/2022).
Co-funded by the European Union (ERC, MindTheGap, StG project no 101041077). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.
Owner
- Name: MindTheGap-ERC
- Login: MindTheGap-ERC
- Kind: organization
- Repositories: 1
- Profile: https://github.com/MindTheGap-ERC
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: Shellbed Condensator
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Niklas
family-names: Hohmann
email: n.hohmann@uu.nl
affiliation: Utrecht University
orcid: 'https://orcid.org/0000-0003-1559-1838'
- given-names: Emilia
family-names: Jarochowska
email: e.b.jarochowska@uu.nl
affiliation: Utrecht University
orcid: 'https://orcid.org/0000-0001-8937-9405'
repository-code: 'https://github.com/MindTheGap-ERC/ShellbedCondensator'
url: >-
https://stratigraphicpaleobiology.shinyapps.io/shellbed_condensator/
abstract: >-
Shiny app to visualize the effects of changing
sedimentation rates on formation of fossil accumulations.
identifiers:
- description: "DOI to latest version"
type: doi
value: 10.5281/zenodo.7739986
- description: "DOI to v1.0.0"
type: doi
value: 10.5281/zenodo.7739987
keywords:
- "Taphonomy"
- "Sedimentology"
- "Paleontology"
- "Palaeontology"
- "Paleobiology"
- "Palaeobiology"
- "R"
- "Shiny"
- "Geology"
- "Stratigraphy"
license: Apache-2.0
commit: 516fac1
version: v1.0.0
date-released: '2023-03-16'
GitHub Events
Total
- Issues event: 1
- Delete event: 1
- Push event: 1
- Pull request event: 2
Last Year
- Issues event: 1
- Delete event: 1
- Push event: 1
- Pull request event: 2
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| NiklasHohmann | 6****n | 43 |
| Bukoplot | e****a@u****l | 4 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: about 2 years ago
All Time
- Total issues: 2
- Total pull requests: 0
- Average time to close issues: about 20 hours
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 0.5
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 0
- Average time to close issues: about 20 hours
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.5
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- NiklasHohmann (3)
Pull Request Authors
- NiklasHohmann (2)